Factsheet for VIT_19s0015g00510.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 6
plasma membrane 6
golgi 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0137g00240.t01	Wine grape	extracellular	64.68	64.52
AT5G55720.1	Thale cress	endoplasmic reticulum, extracellular	61.69	63.27
CDY06557	Canola	extracellular	60.7	63.05
Bra035588.1-P	Field mustard	extracellular	60.7	62.89
CDY20748	Canola	extracellular	60.45	62.63
VIT_17s0000g09810.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	61.94	61.79
VIT_14s0219g00230.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	58.96	58.81
VIT_05s0051g00590.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	62.44	58.37
VIT_07s0005g05520.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	62.94	56.85
VIT_10s0116g01160.t01	Wine grape	endoplasmic reticulum, extracellular	47.76	50.39
VIT_17s0000g05740.t01	Wine grape	extracellular	50.99	47.79
VIT_13s0019g04900.t01	Wine grape	extracellular	48.26	46.63
VIT_14s0108g00030.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	50.5	46.24
VIT_01s0026g01670.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	50.25	45.6
VIT_13s0019g04910.t01	Wine grape	extracellular	55.72	45.16
VIT_08s0007g04820.t01	Wine grape	plastid	54.73	44.99
VIT_01s0026g01680.t01	Wine grape	endoplasmic reticulum, extracellular	48.76	44.24

Protein Annotations

KEGG:00040+4.2.2.2	EntrezGene:100249765	wikigene:100249765	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen
ProteinID:CCB62010	ProteinID:CCB62010.1	UniProt:F6I555	EMBL:FN596747	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334	EntrezGene:LOC100249765
wikigene:LOC100249765	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683	PANTHER:PTHR31683:SF33	InterPro:Pec_lyase
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI00019857BA
ArrayExpress:VIT_19s0015g00510	EnsemblPlantsGene:VIT_19s0015g00510	EnsemblPlants:VIT_19s0015g00510.t01	unigene:Vvi.20286	RefSeq:XP_002265729	RefSeq:XP_002265729.1

Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:F6I555]

Coordinates

chr19:-:8585325..8587296

Molecular Weight (calculated)

44458.5 Da

IEP (calculated)

4.799

GRAVY (calculated)

-0.179

Length

402 amino acids

Sequence
(BLAST)

001: MSTLSLSFLV ILLYVSTAYS ARLLPLESEA TTWSSRGGSL RTQLDEVSCR TGNPIDDCWR CDPDWETNRK MLADCGVGFG RNAIGGRDGE LYVVTDSGND
101: DPANPIPGTL RHAVIQYVPL WIVFDHDMVI NLKEELIMNS YKTIDGRGFN IQIANGACIT IQNVSNIIIH GVYIHGCVPT GNAIVRDRPD HYGMRGMSDG
201: DGISIFGGTD IWIDHCTLAD CYDGLIDAVY GSKSITISNN YMLNHNEAML MGHSDDFLAD KNMQVTIAFN YFGEGLVQRM PRCRHGYFHI VNNVYTDWEM
301: YAIGGSANPT INSQGNVFIA RDDNSTKEVT KRESLLGYEE WKDWNWRSDG DLMLNGAYFR ASGEEAPASY SKASSMVARP ASLLTYITAS AGVLNCKIGY
401: AC

Best Arabidopsis Sequence Match ( AT3G07010.1 )
(BLAST)

001: MAVTKLILFA SALLLTALFI GVNASRSNET WHEHAVENPD EVAAMVDMSI RNSTERRRLG YFSCATGNPI DDCWRCDRKW QLRRKRLADC SIGFGRNAIG
101: GRDGRFYVVT DPGDDDPVNP IPGTLRHAVI QDEPLWIIFK RDMVITLKQE LIMNSFKTID GRGVNVHIAN GACLTIQYVT NIIVHGIHVH DCKPTGNAMV
201: RSSPSHYGFR SMADGDAISI FGSSHIWIDH NSLSNCADGL VDAVMSSTAI TVSNNFFTHH NEVMLLGHSD SYTRDKVMQV TIAYNHFGEG LIQRMPRCRH
301: GYFHVVNNDY THWEMYAIGG SAGPTINSQG NRFLAPVNPF AKEVTKREYT GESKWKHWNW RSEGDLFLNG AFFTRSGAGA GANYARASSL SAKSSSLVGT
401: MTSYSGALNC RAGRRC

Arabidopsis Description

Probable pectate lyase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8Z8]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.