Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 6
- plastid 2
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06557 | Canola | extracellular | 84.95 | 86.05 |
| CDY20748 | Canola | extracellular | 84.69 | 85.57 |
| Bra035588.1-P | Field mustard | extracellular | 84.69 | 85.57 |
| VIT_19s0015g00510.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 63.27 | 61.69 |
| AT1G67750.1 | Thale cress | endoplasmic reticulum, vacuole | 56.12 | 53.92 |
| AT4G24780.1 | Thale cress | endoplasmic reticulum, extracellular | 56.12 | 53.92 |
| AT3G07010.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 55.61 | 52.4 |
| AT5G48900.1 | Thale cress | extracellular | 55.1 | 51.8 |
| AT3G27400.2 | Thale cress | endoplasmic reticulum, vacuole | 54.08 | 50.96 |
| AT5G63180.1 | Thale cress | plastid | 55.87 | 50.69 |
| AT1G04680.1 | Thale cress | extracellular | 55.36 | 50.35 |
| AT3G24670.1 | Thale cress | endoplasmic reticulum, extracellular | 55.1 | 49.09 |
| AT4G13210.2 | Thale cress | endoplasmic reticulum, extracellular | 54.59 | 48.86 |
| AT1G30350.1 | Thale cress | extracellular | 45.66 | 48.64 |
| AT1G11920.1 | Thale cress | endoplasmic reticulum, extracellular | 46.43 | 47.4 |
| AT3G24230.1 | Thale cress | endoplasmic reticulum, golgi, vacuole | 54.34 | 47.12 |
| AT4G13710.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 55.1 | 45.96 |
| AT4G22080.1 | Thale cress | extracellular | 45.66 | 45.43 |
| AT4G22090.1 | Thale cress | extracellular | 45.41 | 45.18 |
| AT3G53190.1 | Thale cress | extracellular | 51.79 | 42.03 |
| AT1G14420.1 | Thale cress | endoplasmic reticulum | 47.19 | 40.3 |
| AT3G54920.1 | Thale cress | extracellular | 51.28 | 40.12 |
| AT5G04310.1 | Thale cress | plasma membrane | 50.26 | 38.03 |
| AT2G02720.1 | Thale cress | extracellular, vacuole | 43.62 | 37.58 |
| AT3G01270.1 | Thale cress | endoplasmic reticulum, extracellular | 44.64 | 36.84 |
| AT5G15110.1 | Thale cress | endoplasmic reticulum, extracellular | 41.84 | 34.75 |
Protein Annotations
| KEGG:00040+4.2.2.2 | Gene3D:2.160.20.10 | MapMan:21.3.5.2 | EntrezGene:835666 | ProteinID:AED96672.1 | ArrayExpress:AT5G55720 |
| EnsemblPlantsGene:AT5G55720 | RefSeq:AT5G55720 | TAIR:AT5G55720 | RefSeq:AT5G55720-TAIR-G | EnsemblPlants:AT5G55720.1 | TAIR:AT5G55720.1 |
| InterPro:AmbAllergen | Unigene:At.29429 | ProteinID:BAB09239.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016829 |
| GO:GO:0030570 | GO:GO:0045490 | GO:GO:0046872 | InterPro:IPR012334 | RefSeq:NP_200383.1 | PFAM:PF00544 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 |
| PO:PO:0025022 | PRINTS:PR00807 | PANTHER:PTHR31683 | PANTHER:PTHR31683:SF33 | InterPro:Pec_lyase | InterPro:Pectin_lyas_fold |
| InterPro:Pectin_lyase_fold/virulence | UniProt:Q9FM66 | SMART:SM00656 | SUPFAM:SSF51126 | SignalP:SignalP-noTM | UniParc:UPI0000048C7B |
| SEG:seg | : | : | : | : | : |
Description
Putative pectate lyase 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9FM66]
Coordinates
chr5:+:22555995..22557725
Molecular Weight (calculated)
43684.2 Da
IEP (calculated)
4.893
GRAVY (calculated)
-0.314
Length
392 amino acids
Sequence
(BLAST)
(BLAST)
001: MSIVCTFFLF LLNTSFAFAF AIPKPPIVRR LSTTVTSNST ASSCSANGNP IDECWRCDEN WKDNRKNLAD CAVGFGRDSI GGRAGEFYTV TDSGDDNPLN
101: PTPGTLRYAA TQDQPLWIIF DRDMVIQLKQ DLQVASYKTI DGRGNNVQIA YGPCLTLYKV SNIIINNLYI HDCVPVKRNA LSSLGGYSDG DGISIFESRD
201: IWIDHCTLEK CYDGLIDAVN GSTDITISNS YMLNHNEVML LGHSDEYSGD RDMRVTIAFN YFGEGLVQRM PRCRHGYFHI VNNIYRDWKM YAIGGSANPT
301: IFSQGNVFIA SNNQFTKEVT KRESADGDEE WKEWNWKSEG DEMVNGAFFT PSGKEDSPSY AKFSSMVARP ASLLKTTHPS VGVLSCEIDQ AC
101: PTPGTLRYAA TQDQPLWIIF DRDMVIQLKQ DLQVASYKTI DGRGNNVQIA YGPCLTLYKV SNIIINNLYI HDCVPVKRNA LSSLGGYSDG DGISIFESRD
201: IWIDHCTLEK CYDGLIDAVN GSTDITISNS YMLNHNEVML LGHSDEYSGD RDMRVTIAFN YFGEGLVQRM PRCRHGYFHI VNNIYRDWKM YAIGGSANPT
301: IFSQGNVFIA SNNQFTKEVT KRESADGDEE WKEWNWKSEG DEMVNGAFFT PSGKEDSPSY AKFSSMVARP ASLLKTTHPS VGVLSCEIDQ AC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.