Factsheet for AT1G11920.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

endoplasmic reticulum 6
golgi 5
extracellular 6
vacuole 4
plasma membrane 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	plastid, secretory
BaCelLo:	endoplasmic reticulum, extracellular, golgi
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98091	Canola	extracellular	88.02	91.11
Bra019730.1-P	Field mustard	extracellular	91.15	90.91
CDY30041	Canola	extracellular	87.76	90.84
AT1G30350.1	Thale cress	extracellular	70.05	73.1
AT4G22090.1	Thale cress	extracellular	70.05	68.27
AT4G22080.1	Thale cress	extracellular	70.05	68.27
PGSC0003DMT400042396	Potato	endoplasmic reticulum, extracellular, vacuole	63.02	60.96
AT1G67750.1	Thale cress	endoplasmic reticulum, vacuole	55.73	52.45
AT4G24780.1	Thale cress	endoplasmic reticulum, extracellular	54.17	50.98
AT3G07010.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	54.95	50.72
AT5G48900.1	Thale cress	extracellular	54.95	50.6
AT3G27400.2	Thale cress	endoplasmic reticulum, vacuole	53.65	49.52
AT1G04680.1	Thale cress	extracellular	54.95	48.96
AT5G63180.1	Thale cress	plastid	53.65	47.69
AT3G24670.1	Thale cress	endoplasmic reticulum, extracellular	54.17	47.27
AT4G13210.2	Thale cress	endoplasmic reticulum, extracellular	53.91	47.26
AT5G55720.1	Thale cress	endoplasmic reticulum, extracellular	47.4	46.43
AT3G24230.1	Thale cress	endoplasmic reticulum, golgi, vacuole	53.91	45.8
AT4G13710.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	53.39	43.62
AT3G53190.1	Thale cress	extracellular	50.26	39.96
AT1G14420.1	Thale cress	endoplasmic reticulum	47.4	39.65
AT5G04310.1	Thale cress	plasma membrane	52.86	39.19
AT3G01270.1	Thale cress	endoplasmic reticulum, extracellular	48.44	39.16
AT2G02720.1	Thale cress	extracellular, vacuole	46.35	39.12
AT5G15110.1	Thale cress	endoplasmic reticulum, extracellular	47.66	38.77
AT3G54920.1	Thale cress	extracellular	50.0	38.32

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	EntrezGene:837742	ProteinID:AAC17625.1	ProteinID:AEE28815.1
ArrayExpress:AT1G11920	EnsemblPlantsGene:AT1G11920	RefSeq:AT1G11920	TAIR:AT1G11920	RefSeq:AT1G11920-TAIR-G	EnsemblPlants:AT1G11920.1
TAIR:AT1G11920.1	InterPro:AmbAllergen	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334
RefSeq:NP_172656.1	UniProt:O65388	PFAM:PF00544	PO:PO:0007611	PO:PO:0009046	PRINTS:PR00807
PANTHER:PTHR31683	PANTHER:PTHR31683:SF18	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656
SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI0000048239	SEG:seg	:	:

Description

Putative pectate lyase 2 [Source:UniProtKB/Swiss-Prot;Acc:O65388]

Coordinates

chr1:-:4023533..4025113

Molecular Weight (calculated)

42694.9 Da

IEP (calculated)

9.529

GRAVY (calculated)

-0.219

Length

384 amino acids

Sequence
(BLAST)

001: MASLFLTIIS LLFAAFSSSV VEAAYSNGYT IPKLLPNPID SCWRRNPYWA SNRRALADCA VGFGKSAVGG KYGSIYVVTN PSDDPENPRP GTLRYAVIQS
101: KPLWITFARD MVIVLRNELI MNSYKTIDGR GAKVEIAYGP CITIQHVSHV IIHGISIHDC KPGKSGRVRS SPTHVGSRKG SDGDAIAIFD SSHIWIDHCF
201: FSRCQDGLID VLHASTAVTI SNNYFTQHDK VMLLGHNDNN VEDKIMRVTI AFNHFGPGLI ERMPRVRRGY AHVANNRYEK WQMYAIGGSA DPTIFSEGNY
301: FVASDDPSKK QVTKRIDSGY DWKRWKWRTS KDVFKNGAYF VPSGYGTVTP LYGRAERFPV SHGSLVPLLT SSAGPLHCYS GRIC

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.