Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 6
- vacuole 4
- plasma membrane 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46471 | Canola | endoplasmic reticulum, extracellular | 91.36 | 91.57 |
| AT4G13210.2 | Thale cress | endoplasmic reticulum, extracellular | 80.91 | 81.28 |
| CDX77400 | Canola | endoplasmic reticulum, extracellular | 89.77 | 80.28 |
| Bra015070.1-P | Field mustard | endoplasmic reticulum, extracellular | 89.55 | 80.08 |
| AT3G07010.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 74.32 | 78.61 |
| AT5G48900.1 | Thale cress | extracellular | 73.86 | 77.94 |
| AT1G04680.1 | Thale cress | extracellular | 70.23 | 71.69 |
| AT1G67750.1 | Thale cress | endoplasmic reticulum, vacuole | 64.55 | 69.61 |
| AT4G24780.1 | Thale cress | endoplasmic reticulum, extracellular | 63.41 | 68.38 |
| AT4G13710.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 70.0 | 65.53 |
| AT5G63180.1 | Thale cress | plastid | 62.05 | 63.19 |
| AT3G24230.1 | Thale cress | endoplasmic reticulum, golgi, vacuole | 64.09 | 62.39 |
| AT3G27400.2 | Thale cress | endoplasmic reticulum, vacuole | 58.86 | 62.26 |
| AT5G55720.1 | Thale cress | endoplasmic reticulum, extracellular | 49.09 | 55.1 |
| AT1G11920.1 | Thale cress | endoplasmic reticulum, extracellular | 47.27 | 54.17 |
| AT3G53190.1 | Thale cress | extracellular | 55.91 | 50.93 |
| AT1G30350.1 | Thale cress | extracellular | 41.36 | 49.46 |
| AT4G22090.1 | Thale cress | extracellular | 43.86 | 48.98 |
| AT4G22080.1 | Thale cress | extracellular | 43.86 | 48.98 |
| AT3G01270.1 | Thale cress | endoplasmic reticulum, extracellular | 50.68 | 46.95 |
| AT1G14420.1 | Thale cress | endoplasmic reticulum | 48.41 | 46.41 |
| AT5G15110.1 | Thale cress | endoplasmic reticulum, extracellular | 49.32 | 45.97 |
| AT3G54920.1 | Thale cress | extracellular | 52.27 | 45.91 |
| AT2G02720.1 | Thale cress | extracellular, vacuole | 46.59 | 45.05 |
| AT5G04310.1 | Thale cress | plasma membrane | 52.95 | 44.98 |
Protein Annotations
| KEGG:00040+4.2.2.2 | Gene3D:2.160.20.10 | MapMan:21.3.5.2 | EntrezGene:822063 | UniProt:A0A178VLR8 | ProteinID:AEE76935.1 |
| EMBL:AK118210 | ArrayExpress:AT3G24670 | EnsemblPlantsGene:AT3G24670 | RefSeq:AT3G24670 | TAIR:AT3G24670 | RefSeq:AT3G24670-TAIR-G |
| EnsemblPlants:AT3G24670.1 | TAIR:AT3G24670.1 | InterPro:AmbAllergen | Unigene:At.43520 | ProteinID:BAB01216.1 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016829 | GO:GO:0030570 | GO:GO:0045490 | GO:GO:0046872 | InterPro:IPR012334 |
| RefSeq:NP_189110.1 | ProteinID:OAP06678.1 | PFAM:PF00544 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00807 |
| PANTHER:PTHR31683 | PANTHER:PTHR31683:SF34 | InterPro:Pec_lyase | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | UniProt:Q9LJ42 |
| SMART:SM00656 | SUPFAM:SSF51126 | SignalP:SignalP-noTM | UniParc:UPI0000048776 | SEG:seg | : |
Description
Pectate lyase [Source:UniProtKB/TrEMBL;Acc:A0A178VLR8]
Coordinates
chr3:-:9005939..9008801
Molecular Weight (calculated)
48764.1 Da
IEP (calculated)
8.974
GRAVY (calculated)
-0.273
Length
440 amino acids
Sequence
(BLAST)
(BLAST)
001: MVIFSRSFLA LSTTLIILAL CINSSTMAQE TEDLNSHSSS NSSTANKLPN DDGAWNEHAV KNPEEVAAMV DMKIKNSTER RRLGFFSCAT GNPIDDCWRC
101: DRNWHLRRKR LANCAIGFGR NAIGGRDGRY YVVTDPSDHD AVNPRPGTLR HAVIQDRPLW IVFKRDMVIT LTQELIMNSF KTIDGRGVNV AIAGGACITI
201: QYVTNIIIHG INVHDCRRTG NAMVRSSPSH YGWRTMADGD AISIFGSSHI WIDHNSLSNC ADGLIDAIMG STAITISNNY MTHHNEVMLM GHSDSYTRDK
301: LMQVTIAYNH FGEGLIQRMP RCRHGYFHVV NNDYTHWVMY AIGGSANPTI NSQGNRFLAP GNPFAKEVTK RVGSWQGEWK QWNWRSQGDL MLNGAYFTKS
401: GAAAPASYAR ASSLGAKPAS VVSMLTYSSG ALKCRIGMRC
101: DRNWHLRRKR LANCAIGFGR NAIGGRDGRY YVVTDPSDHD AVNPRPGTLR HAVIQDRPLW IVFKRDMVIT LTQELIMNSF KTIDGRGVNV AIAGGACITI
201: QYVTNIIIHG INVHDCRRTG NAMVRSSPSH YGWRTMADGD AISIFGSSHI WIDHNSLSNC ADGLIDAIMG STAITISNNY MTHHNEVMLM GHSDSYTRDK
301: LMQVTIAYNH FGEGLIQRMP RCRHGYFHVV NNDYTHWVMY AIGGSANPTI NSQGNRFLAP GNPFAKEVTK RVGSWQGEWK QWNWRSQGDL MLNGAYFTKS
401: GAAAPASYAR ASSLGAKPAS VVSMLTYSSG ALKCRIGMRC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.