Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 6
- vacuole 5
- plasma membrane 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026583.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 83.74 | 83.37 |
| CDY45202 | Canola | extracellular | 83.96 | 83.22 |
| Bra024811.1-P | Field mustard | extracellular | 83.74 | 83.01 |
| CDY03043 | Canola | extracellular | 81.98 | 81.26 |
| CDY04133 | Canola | extracellular | 81.76 | 81.05 |
| Bra017412.1-P | Field mustard | extracellular | 81.54 | 80.83 |
| CDY17432 | Canola | extracellular | 81.1 | 80.39 |
| AT1G14420.1 | Thale cress | endoplasmic reticulum | 73.41 | 72.77 |
| TraesCS4A01G385700.1 | Wheat | cytosol | 28.57 | 59.36 |
| VIT_14s0108g00030.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 56.48 | 58.54 |
| VIT_01s0026g01670.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 55.6 | 57.11 |
| GSMUA_Achr10P... | Banana | extracellular | 48.35 | 56.41 |
| KRH45851 | Soybean | extracellular | 55.82 | 56.32 |
| GSMUA_Achr6P00830_001 | Banana | endoplasmic reticulum, extracellular | 53.63 | 55.84 |
| GSMUA_Achr2P16830_001 | Banana | endoplasmic reticulum, extracellular | 53.63 | 55.71 |
| KRH69345 | Soybean | extracellular | 54.51 | 55.48 |
| KRH74782 | Soybean | extracellular | 54.51 | 55.36 |
| VIT_01s0026g01680.t01 | Wine grape | endoplasmic reticulum, extracellular | 53.63 | 55.08 |
| GSMUA_Achr10P... | Banana | cytosol | 41.76 | 54.91 |
| Solyc03g058890.2.1 | Tomato | extracellular | 54.07 | 54.79 |
| PGSC0003DMT400017863 | Potato | extracellular | 52.97 | 54.52 |
| PGSC0003DMT400014086 | Potato | extracellular | 53.41 | 54.36 |
| Solyc02g087670.2.1 | Tomato | extracellular | 51.65 | 52.69 |
| PGSC0003DMT400003310 | Potato | extracellular | 51.43 | 52.47 |
| Zm00001d000216_P001 | Maize | golgi, vacuole | 50.33 | 52.28 |
| Os06t0144200-01 | Rice | extracellular, plasma membrane | 51.65 | 52.22 |
| PGSC0003DMT400017862 | Potato | endoplasmic reticulum, extracellular | 45.49 | 52.14 |
| AT3G01270.1 | Thale cress | endoplasmic reticulum, extracellular | 53.85 | 51.58 |
| HORVU6Hr1G038630.1 | Barley | extracellular | 45.71 | 51.36 |
| Zm00001d046389_P007 | Maize | endoplasmic reticulum, extracellular | 48.79 | 51.27 |
| EES06507 | Sorghum | golgi, vacuole | 49.67 | 50.79 |
| OQU75805 | Sorghum | mitochondrion | 49.23 | 50.68 |
| EER88571 | Sorghum | endoplasmic reticulum, plasma membrane | 50.55 | 50.66 |
| AT1G67750.1 | Thale cress | endoplasmic reticulum, vacuole | 45.05 | 50.25 |
| AT4G24780.1 | Thale cress | endoplasmic reticulum, extracellular | 45.05 | 50.25 |
| AT5G15110.1 | Thale cress | endoplasmic reticulum, extracellular | 52.09 | 50.21 |
| Os06t0583900-01 | Rice | plasma membrane | 49.23 | 50.0 |
| Os02t0214400-01 | Rice | plasma membrane | 48.79 | 49.78 |
| TraesCS7D01G356700.1 | Wheat | extracellular | 48.57 | 49.77 |
| TraesCS7A01G086600.1 | Wheat | endoplasmic reticulum, extracellular | 48.57 | 49.33 |
| TraesCS7A01G365700.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 48.13 | 49.32 |
| Os06t0144900-01 | Rice | mitochondrion | 51.21 | 49.26 |
| Solyc03g058910.2.1 | Tomato | extracellular, golgi | 43.08 | 49.25 |
| AT3G27400.2 | Thale cress | endoplasmic reticulum, vacuole | 44.84 | 49.04 |
| EER87830 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 50.11 | 49.03 |
| HORVU7Hr1G085860.1 | Barley | endoplasmic reticulum, extracellular, vacuole | 47.69 | 48.87 |
| TraesCS7B01G261700.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 47.69 | 48.87 |
| PGSC0003DMT400014085 | Potato | extracellular, golgi | 42.64 | 48.74 |
| Zm00001d036158_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 47.91 | 48.12 |
| AT1G04680.1 | Thale cress | extracellular | 45.49 | 48.03 |
| AT3G07010.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 43.74 | 47.84 |
| TraesCS6B01G211900.1 | Wheat | extracellular, golgi, vacuole | 44.4 | 47.53 |
| AT5G63180.1 | Thale cress | plastid | 45.05 | 47.45 |
| TraesCS6D01G170500.1 | Wheat | golgi | 44.18 | 47.29 |
| AT4G13210.2 | Thale cress | endoplasmic reticulum, extracellular | 45.05 | 46.8 |
| AT3G24670.1 | Thale cress | endoplasmic reticulum, extracellular | 45.05 | 46.59 |
| AT5G48900.1 | Thale cress | extracellular | 42.64 | 46.52 |
| Zm00001d036945_P001 | Maize | endoplasmic reticulum | 42.86 | 46.43 |
| AT1G11920.1 | Thale cress | endoplasmic reticulum, extracellular | 39.12 | 46.35 |
| AT1G30350.1 | Thale cress | extracellular | 37.36 | 46.2 |
| AT4G22090.1 | Thale cress | extracellular | 39.78 | 45.94 |
| AT4G22080.1 | Thale cress | extracellular | 39.78 | 45.94 |
| AT3G24230.1 | Thale cress | endoplasmic reticulum, golgi, vacuole | 45.49 | 45.8 |
| TraesCS6A01G184500.2 | Wheat | extracellular, golgi, vacuole | 45.49 | 44.71 |
| HORVU7Hr1G019500.1 | Barley | mitochondrion | 50.11 | 43.85 |
| AT5G55720.1 | Thale cress | endoplasmic reticulum, extracellular | 37.58 | 43.62 |
| AT4G13710.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 44.84 | 43.4 |
| AT3G53190.1 | Thale cress | extracellular | 42.64 | 40.17 |
| AT3G54920.1 | Thale cress | extracellular | 43.52 | 39.52 |
| GSMUA_Achr7P08840_001 | Banana | nucleus | 55.6 | 37.76 |
| AT5G04310.1 | Thale cress | plasma membrane | 42.86 | 37.64 |
| Solyc02g067450.2.1 | Tomato | extracellular | 50.11 | 37.01 |
| CDY04136 | Canola | mitochondrion, nucleus | 0.44 | 1.32 |
Protein Annotations
| KEGG:00040+4.2.2.2 | Gene3D:2.160.20.10 | MapMan:21.3.5.2 | EntrezGene:814801 | ProteinID:AAC05350.1 | ProteinID:AEC05615.1 |
| ArrayExpress:AT2G02720 | EnsemblPlantsGene:AT2G02720 | RefSeq:AT2G02720 | TAIR:AT2G02720 | RefSeq:AT2G02720-TAIR-G | EnsemblPlants:AT2G02720.1 |
| TAIR:AT2G02720.1 | InterPro:AmbAllergen | Unigene:At.48411 | EMBL:BT005757 | EMBL:BT015946 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016829 | GO:GO:0030570 | GO:GO:0045490 | GO:GO:0046872 | InterPro:IPR012334 |
| RefSeq:NP_178375.1 | UniProt:O64510 | PFAM:PF00544 | PFAM:PF04431 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001185 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009009 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PRINTS:PR00807 | PANTHER:PTHR31683 | PANTHER:PTHR31683:SF14 | InterPro:Pec_lyase | InterPro:Pec_lyase_N |
| InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | UniProt:Q5U1E6 | SMART:SM00656 | SUPFAM:SSF51126 | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI000000C721 | SEG:seg | : | : | : |
Description
Probable pectate lyase 6 [Source:UniProtKB/Swiss-Prot;Acc:O64510]
Coordinates
chr2:+:762927..765027
Molecular Weight (calculated)
51260.4 Da
IEP (calculated)
10.056
GRAVY (calculated)
-0.462
Length
455 amino acids
Sequence
(BLAST)
(BLAST)
001: MVNLGSYVFV FVALSLTVVV PSVQAHIAEY DEYWTQRQTN ALRETLESYD PNPENVTDHF NYHAALAMET TGIVNETRRD LRQVGRGKKT TRRGGRFESL
101: NAIDKCWRGD KNWDKNRKKL ADCVLGFGRK TTGGKNGPIY VVTDPSDNDL LKPKPGTIRH AVTRDRPLWI IFARSMIIKL QQELIITNDK TIDGRGAKIY
201: ITGGAGLTLQ FVRNVIIHNI HIKQIKRGAG GLIIDSEQHF GLRTVSDGDG INIFGATNVW IDHVSMTDCS DGMIDAIMGS TAITISNSHF TDHDEVMLFG
301: GTNKDVIDKK MQITVAFNHF GKRLKQRMPR VRFGLVHVVN NDYTHWEMYA IGGNMNPTII SQGNRFIAPP IEDSKQVTKR EYTPYPEWKS WNWQSEKDYF
401: LNGAYFVQSG KANAWSATPK NPIPRKFAIR PQPGTKVRRL TKDAGTLGCK PGKSC
101: NAIDKCWRGD KNWDKNRKKL ADCVLGFGRK TTGGKNGPIY VVTDPSDNDL LKPKPGTIRH AVTRDRPLWI IFARSMIIKL QQELIITNDK TIDGRGAKIY
201: ITGGAGLTLQ FVRNVIIHNI HIKQIKRGAG GLIIDSEQHF GLRTVSDGDG INIFGATNVW IDHVSMTDCS DGMIDAIMGS TAITISNSHF TDHDEVMLFG
301: GTNKDVIDKK MQITVAFNHF GKRLKQRMPR VRFGLVHVVN NDYTHWEMYA IGGNMNPTII SQGNRFIAPP IEDSKQVTKR EYTPYPEWKS WNWQSEKDYF
401: LNGAYFVQSG KANAWSATPK NPIPRKFAIR PQPGTKVRRL TKDAGTLGCK PGKSC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.