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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi, extracellular

Predictor Summary:
  • extracellular 8
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 5
  • golgi 6
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, golgi
Any Predictor:mitochondrion, secretory
BaCelLo:secretory
EpiLoc:extracellular
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:mitochondrion
YLoc:golgi
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc03g058910.2.1 Tomato extracellular, golgi 96.23 96.23
PGSC0003DMT400017862 Potato endoplasmic reticulum, extracellular 64.32 64.48
TraesCS4A01G385700.1 Wheat cytosol 28.89 52.51
PGSC0003DMT400003310 Potato extracellular 55.78 49.78
GSMUA_Achr10P... Banana cytosol 43.22 49.71
GSMUA_Achr10P... Banana extracellular 47.99 48.97
PGSC0003DMT400046723 Potato endoplasmic reticulum, golgi, vacuole 53.02 48.51
PGSC0003DMT400014086 Potato extracellular 54.27 48.32
PGSC0003DMT400017863 Potato extracellular 53.52 48.19
HORVU6Hr1G038630.1 Barley extracellular 48.99 48.15
VIT_01s0026g01670.t01 Wine grape endoplasmic reticulum, extracellular, vacuole 53.52 48.08
GSMUA_Achr6P00830_001 Banana endoplasmic reticulum, extracellular 52.26 47.6
PGSC0003DMT400083135 Potato extracellular 52.01 47.59
GSMUA_Achr2P16830_001 Banana endoplasmic reticulum, extracellular 52.26 47.49
PGSC0003DMT400039385 Potato extracellular 47.99 47.39
VIT_14s0108g00030.t01 Wine grape endoplasmic reticulum, extracellular, vacuole 52.26 47.38
VIT_01s0026g01680.t01 Wine grape endoplasmic reticulum, extracellular 52.26 46.95
PGSC0003DMT400069632 Potato vacuole 47.74 46.91
PGSC0003DMT400027955 Potato extracellular 47.24 46.88
EES06507 Sorghum golgi, vacuole 52.26 46.74
PGSC0003DMT400032910 Potato endoplasmic reticulum, extracellular, vacuole 46.98 46.4
KRH69345 Soybean extracellular 52.01 46.31
PGSC0003DMT400002241 Potato extracellular 51.01 46.24
TraesCS7A01G086600.1 Wheat endoplasmic reticulum, extracellular 52.01 46.21
TraesCS6D01G170500.1 Wheat golgi 49.25 46.12
KRH74782 Soybean extracellular 51.76 45.98
KRH45851 Soybean extracellular 51.76 45.68
TraesCS6B01G211900.1 Wheat extracellular, golgi, vacuole 48.74 45.65
CDY68729 Canola endoplasmic reticulum, extracellular, plasma membrane 52.51 45.63
Bra016700.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 52.51 45.63
CDX96854 Canola endoplasmic reticulum, extracellular, plasma membrane 52.26 45.41
KRH18498 Soybean endoplasmic reticulum, extracellular, vacuole 50.5 45.37
Os06t0144200-01 Rice extracellular, plasma membrane 51.26 45.33
OQU75805 Sorghum mitochondrion 50.25 45.25
Zm00001d000216_P001 Maize golgi, vacuole 49.75 45.21
Bra026832.1-P Field mustard extracellular 51.26 45.13
Zm00001d046389_P007 Maize endoplasmic reticulum, extracellular 48.99 45.03
KRG93502 Soybean extracellular 50.0 44.92
PGSC0003DMT400040893 Potato endoplasmic reticulum, vacuole 48.99 44.42
PGSC0003DMT400042396 Potato endoplasmic reticulum, extracellular, vacuole 44.22 44.33
KRH01130 Soybean extracellular 48.99 44.32
AT1G14420.1 Thale cress endoplasmic reticulum 51.01 44.23
Os02t0214400-01 Rice plasma membrane 49.5 44.17
Zm00001d036158_P001 Maize endoplasmic reticulum, extracellular, vacuole 50.25 44.15
TraesCS7A01G365700.1 Wheat endoplasmic reticulum, extracellular, vacuole 49.25 44.14
TraesCS7D01G356700.1 Wheat extracellular 48.99 43.92
Bra017412.1-P Field mustard extracellular 50.5 43.79
CDY04133 Canola extracellular 50.5 43.79
TraesCS7B01G261700.1 Wheat endoplasmic reticulum, extracellular, vacuole 48.74 43.69
CDY17432 Canola extracellular 50.25 43.57
HORVU7Hr1G085860.1 Barley endoplasmic reticulum, extracellular, vacuole 48.49 43.47
Bra026221.1-P Field mustard endoplasmic reticulum 50.0 43.45
Os06t0583900-01 Rice plasma membrane 48.74 43.3
PGSC0003DMT400042395 Potato extracellular 41.21 43.04
CDY39314 Canola extracellular 49.5 42.92
Bra026583.1-P Field mustard endoplasmic reticulum, plasma membrane 49.25 42.89
CDX74293 Canola endoplasmic reticulum, extracellular 50.75 42.89
CDX91953 Canola endoplasmic reticulum, extracellular 50.75 42.89
PGSC0003DMT400076251 Potato extracellular 48.24 42.86
EER88571 Sorghum endoplasmic reticulum, plasma membrane 48.74 42.73
CDY28691 Canola endoplasmic reticulum, extracellular, vacuole 50.25 42.64
AT2G02720.1 Thale cress extracellular, vacuole 48.74 42.64
Os06t0144900-01 Rice mitochondrion 50.5 42.49
PGSC0003DMT400009869 Potato cytosol 45.48 42.49
TraesCS6A01G184500.2 Wheat extracellular, golgi, vacuole 49.25 42.33
CDY03043 Canola extracellular 48.74 42.27
PGSC0003DMT400045436 Potato extracellular 48.74 42.27
Bra001011.1-P Field mustard endoplasmic reticulum, extracellular 50.0 42.25
AT5G15110.1 Thale cress endoplasmic reticulum, extracellular 50.0 42.16
EER87830 Sorghum endoplasmic reticulum, extracellular, vacuole 49.25 42.15
CDX85564 Canola extracellular 50.0 42.07
Bra024811.1-P Field mustard extracellular 48.49 42.05
CDY45202 Canola extracellular 48.49 42.05
AT3G01270.1 Thale cress endoplasmic reticulum, extracellular 50.0 41.89
CDX81636 Canola endoplasmic reticulum 50.75 41.74
CDY53552 Canola extracellular 51.76 41.62
PGSC0003DMT400051938 Potato endoplasmic reticulum, extracellular 47.99 41.52
CDX70590 Canola endoplasmic reticulum, extracellular 49.5 41.47
CDX78607 Canola endoplasmic reticulum, extracellular 49.5 41.47
Bra006279.1-P Field mustard endoplasmic reticulum, extracellular 49.5 41.47
Bra023504.1-P Field mustard extracellular 50.0 41.37
CDY63769 Canola extracellular 49.5 41.13
CDX69550 Canola endoplasmic reticulum, extracellular 51.26 40.88
Bra008721.1-P Field mustard endoplasmic reticulum, extracellular 51.26 40.88
CDY66593 Canola endoplasmic reticulum, extracellular 51.01 40.68
PGSC0003DMT400011046 Potato mitochondrion 29.65 40.55
Zm00001d036945_P001 Maize endoplasmic reticulum 42.46 40.24
HORVU7Hr1G019500.1 Barley mitochondrion 52.26 40.0
PGSC0003DMT400079776 Potato plasma membrane 44.72 36.33
PGSC0003DMT400060374 Potato extracellular, plasma membrane, vacuole 44.97 31.35
GSMUA_Achr7P08840_001 Banana nucleus 51.01 30.3
CDY04136 Canola mitochondrion, nucleus 0.25 0.66
Protein Annotations
KEGG:00040+4.2.2.2EntrezGene:102603003Gene3D:2.160.20.10MapMan:21.3.5.2InterPro:AmbAllergenGO:GO:0003674
GO:GO:0003824GO:GO:0005488GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0009056
GO:GO:0009987GO:GO:0016829GO:GO:0030570GO:GO:0045490GO:GO:0046872InterPro:IPR012334
UniProt:M1A3P9PFAM:PF00544EnsemblPlantsGene:PGSC0003DMG400005522PGSC:PGSC0003DMG400005522EnsemblPlants:PGSC0003DMT400014085PRINTS:PR00807
PANTHER:PTHR31683PANTHER:PTHR31683:SF7InterPro:Pec_lyaseInterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulenceSMART:SM00656
SUPFAM:SSF51126SignalP:SignalP-TMTMHMM:TMhelixUniParc:UPI0002963878RefSeq:XP_006361836.1:
Description
Pectate lyase P56 [Source:PGSC_GENE;Acc:PGSC0003DMG400005522]
Coordinates
chr3:+:31546130..31547779
Molecular Weight (calculated)
44402.1 Da
IEP (calculated)
8.031
GRAVY (calculated)
-0.247
Length
398 amino acids
Sequence
(BLAST)
001: MEYSYRTKIN VLFIVLILFV FAALGTATNA PRRKLTKKYK GPCMAVNSID KCWRCDPFWA EDRQKMADCA LGFGINAMGG KYGPYYIVTD NSDDDVIDPK
101: PGTLRFGVIQ KGPLWITFAK SMRIELSREL IVSSNKTIDG RGKYVHIANG AGIKIQSASN VIISNLRIHH IVPTAGGLLR ESDDHLGLRG GDEGDAISIF
201: NSHDIWIDHI SMSRAADGLI DAVAGSTNIT ISNCHFTDHE KVMLFGANDH SVEDRGMKIT LVYNHFGKRL DQRMPRCRFG FFHLVNNDYT HWERYAIGGS
301: SGATIISQGN RFIAEDKLLV KEVTYREKST SSVEEWMKWT WISDGDDLEN GATFTPSGDQ NLLSKIDHLN LIQPEPSSKV GLLTKFSGAL SCNIRRPC
Best Arabidopsis Sequence Match ( AT1G14420.1 )
(BLAST)
001: MAAAFLNLGG YVFVFFSSFL AIVAPQVRGN VAVFDSYWTQ RQSDALKQTI GSYDPHPLNV TNHFNYHVNI AVDASESRND TRRELTQVRS GRKTHKSSGK
101: CLAYNPIDNC WRCDRNWANN RKKLADCVLG FGRRTTGGKD GPIYVVKDAS DNDLINPKPG TLRHAVTRDG PLWIIFARSM IIKLQQELMI TSDKTIDGRG
201: ARVYIMEGAG LTLQFVNNVI IHNIYVKHIV PGNGGLIRDS EAHIGLRTKS DGDGISLFGA TNIWIDHVSM TRCADGMIDA IDGSTAVTIS NSHFTDHQEV
301: MLFGARDEHV IDKKMQITVA FNHFGKRLEQ RMPRCRYGTI HVVNNDYTHW EMYAIGGNMN PTIISQGNRF IAPPNEEAKQ ITKREYTPYG EWKSWNWQSE
401: GDYFLNGAYF VQSGKANAWS SKPKTPLPNK FTIRPKPGTM VRKLTMDAGV LGCKLGEAC
Arabidopsis Description
AT59Probable pectate lyase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S2]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.