Factsheet for PGSC0003DMT400032910

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 7
plasma membrane 6
golgi 5
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, nucleus, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g093580.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	98.51	98.27
VIT_14s0219g00230.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	82.38	82.38
KRH58231	Soybean	extracellular	80.65	80.45
KRG93976	Soybean	extracellular	80.15	79.95
PGSC0003DMT400039385	Potato	extracellular	78.16	78.16
PGSC0003DMT400027955	Potato	extracellular	75.93	76.31
CDX83690	Canola	endoplasmic reticulum, extracellular, vacuole	76.92	75.24
Bra025274.1-P	Field mustard	extracellular	76.67	75.0
CDY00156	Canola	extracellular, plastid	76.43	74.76
Bra039081.1-P	Field mustard	extracellular, plastid	76.18	74.51
PGSC0003DMT400069632	Potato	vacuole	74.69	74.32
CDY20049	Canola	plastid, vacuole	75.93	74.27
AT3G27400.2	Thale cress	endoplasmic reticulum, vacuole	75.93	73.56
CDY03964	Canola	extracellular	74.69	73.06
CDY34149	Canola	extracellular	65.01	72.98
Bra033008.1-P	Field mustard	extracellular	71.96	72.86
PGSC0003DMT400040893	Potato	endoplasmic reticulum, vacuole	67.49	61.96
PGSC0003DMT400076251	Potato	extracellular	67.49	60.71
PGSC0003DMT400051938	Potato	endoplasmic reticulum, extracellular	66.75	58.48
PGSC0003DMT400042395	Potato	extracellular	52.61	55.64
PGSC0003DMT400042396	Potato	endoplasmic reticulum, extracellular, vacuole	53.1	53.9
PGSC0003DMT400011046	Potato	mitochondrion	38.71	53.61
PGSC0003DMT400083135	Potato	extracellular	55.58	51.49
PGSC0003DMT400009869	Potato	cytosol	54.34	51.41
PGSC0003DMT400002241	Potato	extracellular	55.34	50.8
PGSC0003DMT400014086	Potato	extracellular	55.34	49.89
PGSC0003DMT400017863	Potato	extracellular	54.59	49.77
PGSC0003DMT400079776	Potato	plasma membrane	60.05	49.39
PGSC0003DMT400017862	Potato	endoplasmic reticulum, extracellular	47.64	48.36
PGSC0003DMT400003310	Potato	extracellular	53.35	48.21
PGSC0003DMT400046723	Potato	endoplasmic reticulum, golgi, vacuole	51.86	48.05
PGSC0003DMT400014085	Potato	extracellular, golgi	46.4	46.98
PGSC0003DMT400045436	Potato	extracellular	53.35	46.84
PGSC0003DMT400060374	Potato	extracellular, plasma membrane, vacuole	59.8	42.21

Protein Annotations

KEGG:00040+4.2.2.2	EntrezGene:102586644	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334
UniProt:M1AYA6	PFAM:PF00544	EnsemblPlantsGene:PGSC0003DMG400012640	PGSC:PGSC0003DMG400012640	EnsemblPlants:PGSC0003DMT400032910	PRINTS:PR00807
PANTHER:PTHR31683	PANTHER:PTHR31683:SF29	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656
SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI000296A116	RefSeq:XP_006338637.2	SEG:seg	:

Description

Pectate lyase P18 [Source:PGSC_GENE;Acc:PGSC0003DMG400012640]

Coordinates

chr2:-:47581291..47583372

Molecular Weight (calculated)

44511.5 Da

IEP (calculated)

7.779

GRAVY (calculated)

-0.382

Length

403 amino acids

Sequence
(BLAST)

001: MSTFLLTFSL LLLAPLLVIS SIQDPELVVQ DVHRSINASL TRRNLGYLSC GSGNPIDDCW RCNPNWEKNR QRLADCAIGF GKNAIGGKNG RIYVVTDSGN
101: DDPVNPKPGT LRHAVIQDEP LWIIFKRDMV IQLKQELVMN SYKTIDGRGA SVHISGGPCI TIHHTSNIII HGINIHDCKQ SGNGNIRDSP NHSGWWDVSD
201: GDGISIFGGK NIWVDHCSLS NCHDGLIDAI HGSTAITISN NYFTHHDKVM LLGHSDSFTQ DQGMQVTVAF NHFGEGLVQR MPRCRHGYFH VVNNDYTHWE
301: MYAIGGSAAP TINSQGNRFL APYEKYRKEV TKHEDAPESQ WRSWNWRSEG DLMLNGAYFR QTGAGASSST YARASSLSAR PSSLVGSITT NAGPINCKKG
401: SRC

Best Arabidopsis Sequence Match ( AT5G63180.1 )
(BLAST)

001: MFRPNSLLIP SNLSTTKSQR NTMLNSSYLS FALIFFCCIL FSALASSLPV SDPELVVEEV HRKINESISR RKLGFFSCGS GNPIDDCWRC DKDWEKNRKR
101: LADCGIGFGK NAIGGRDGEI YVVTDPGNDD PVNPRPGTLR YAVIQDEPLW IIFKRDMTIQ LKEELIMNSF KTLDGRGASV HISGGPCITI QYVTNIIIHG
201: LHIHDCKQGG NTYVRDSPEH YGYRTVSDGD GVSIFGGSHV WVDHCSLSNC NDGLIDAIRG STAITISNNY LTHHNKVMLL GHSDTYEQDK NMQVTIAFNH
301: FGEGLVQRMP RCRHGYFHVV NNDYTHWEMY AIGGSANPTI NSQGNRFLAP DDSSSKEVTK HEDAPEDEWR NWNWRSEGDL LLNGAFFTYS GAGPAKSSSY
401: SKASSLAARP SSHVGEITIA SGALSCKRGS HC

Arabidopsis Description

Probable pectate lyase 22 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z25]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.