Factsheet for PGSC0003DMT400039385

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 6
vacuole 5
plasma membrane 6
golgi 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g111690.2.1	Tomato	nucleus	97.27	97.27
PGSC0003DMT400069632	Potato	vacuole	87.1	86.67
KRH03893	Soybean	nucleus	86.6	85.96
KRH57176	Soybean	nucleus	86.35	85.71
CDY08948	Canola	endoplasmic reticulum, extracellular	86.1	85.47
Bra013833.1-P	Field mustard	endoplasmic reticulum, vacuole	85.61	84.98
CDY03419	Canola	endoplasmic reticulum, extracellular	85.61	84.98
CDY34310	Canola	endoplasmic reticulum, vacuole	85.36	84.73
KRH63675	Soybean	endoplasmic reticulum, extracellular, vacuole	85.61	84.56
CDY24847	Canola	endoplasmic reticulum, extracellular	85.11	84.48
Bra010482.1-P	Field mustard	endoplasmic reticulum, extracellular	84.86	84.24
KRH54276	Soybean	endoplasmic reticulum, golgi, vacuole	84.86	83.82
AT4G24780.1	Thale cress	endoplasmic reticulum, extracellular	84.86	83.82
CDY11033	Canola	endoplasmic reticulum, extracellular	83.87	83.25
CDX92652	Canola	endoplasmic reticulum, extracellular	83.62	83.0
PGSC0003DMT400027955	Potato	extracellular	81.39	81.8
PGSC0003DMT400032910	Potato	endoplasmic reticulum, extracellular, vacuole	78.16	78.16
Bra019209.1-P	Field mustard	endoplasmic reticulum, extracellular	78.66	76.2
PGSC0003DMT400040893	Potato	endoplasmic reticulum, vacuole	72.46	66.51
PGSC0003DMT400076251	Potato	extracellular	72.46	65.18
PGSC0003DMT400051938	Potato	endoplasmic reticulum, extracellular	70.97	62.17
PGSC0003DMT400042395	Potato	extracellular	52.36	55.38
PGSC0003DMT400011046	Potato	mitochondrion	39.95	55.33
PGSC0003DMT400042396	Potato	endoplasmic reticulum, extracellular, vacuole	53.35	54.16
PGSC0003DMT400083135	Potato	extracellular	56.82	52.64
PGSC0003DMT400002241	Potato	extracellular	56.33	51.71
PGSC0003DMT400009869	Potato	cytosol	54.09	51.17
PGSC0003DMT400017863	Potato	extracellular	55.83	50.91
PGSC0003DMT400079776	Potato	plasma membrane	61.79	50.82
PGSC0003DMT400046723	Potato	endoplasmic reticulum, golgi, vacuole	54.59	50.57
PGSC0003DMT400014086	Potato	extracellular	55.09	49.66
PGSC0003DMT400003310	Potato	extracellular	54.59	49.33
PGSC0003DMT400017862	Potato	endoplasmic reticulum, extracellular	48.39	49.12
PGSC0003DMT400014085	Potato	extracellular, golgi	47.39	47.99
PGSC0003DMT400045436	Potato	extracellular	54.09	47.49
PGSC0003DMT400060374	Potato	extracellular, plasma membrane, vacuole	59.31	41.86

Protein Annotations

KEGG:00040+4.2.2.2	EntrezGene:102602394	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334
UniProt:M1B875	PFAM:PF00544	EnsemblPlantsGene:PGSC0003DMG400015230	PGSC:PGSC0003DMG400015230	EnsemblPlants:PGSC0003DMT400039385	PRINTS:PR00807
PANTHER:PTHR31683	PANTHER:PTHR31683:SF28	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656
SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI000296D5EB	RefSeq:XP_006351443.1	SEG:seg	:

Description

Pectate lyase [Source:PGSC_GENE;Acc:PGSC0003DMG400015230]

Coordinates

chr3:+:51332584..51334561

Molecular Weight (calculated)

44181.3 Da

IEP (calculated)

7.384

GRAVY (calculated)

-0.242

Length

403 amino acids

Sequence
(BLAST)

001: MATSSVFILF LLSFLLLLPS LLASSNPQQV VDEVQRSING SRRNLGYLSC GTGNPIDDCW RCDPNWEKNR QRLADCAIGF GKNAIGGRDG KIYVVTDSGD
101: DNAVTPKPGT LRHAVIQTEP LWIIFARDMV IQLKEELIMN SFKTIDGRGA SVHIAGGPCI TIQYVTNIII HGIHIHDCKQ GGNAMVRSSP SHYGWRTISD
201: GDGVSIFGGS HVWVDHCSLS NCMDGLIDAI MGSTAITISN NYMTHHDKVM LLGHSDSYTQ DKNMQVTIAF NHFGEGLVQR MPRCRHGYFH VVNNDYTHWE
301: MYAIGGSADP TINSQGNRFL APDIRFSKEV TKHEDAPESE WKNWNWRTDG DLMLNGAFFT RSGAGASSSS YAKASSLSAR PSSLVGNLVS SSGALNCKKG
401: SRC

Best Arabidopsis Sequence Match ( AT4G24780.1 )
(BLAST)

001: MKMQTKKLFI TIVSFLLYAP LFLSSPVPDP ESVVEEVHKS INASVAGRRK LGYLSCTTGN PIDDCWRCDP HWEQHRQRLA DCAIGFGKNA IGGRDGRIYV
101: VTDSGNDNPV SPKPGTLRHA VVQDEPLWII FQRDMTIQLK EELIMNSFKT IDGRGASVHI SGGPCITIQY VTNIIIHGIH IHDCKQGGNA MVRSSPRHFG
201: WRTISDGDGV SIFGGSHVWV DHCSFSNCED GLIDAIMGST AITLSNNHMT HHDKVMLLGH SDTYSRDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN
301: DYTHWEMYAI GGSANPTINS QGNRFLAPNI RFSKEVTKHE DAPESEWKRW NWRSSGDLLL NGAFFTPSGG AASSSYAKAS SLGAKPSSLV GPLTSTSGAL
401: NCRKGSRC

Arabidopsis Description

Probable pectate lyase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5M8]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.