Factsheet for PGSC0003DMT400002241

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 6
nucleus 2
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol, extracellular, golgi, nucleus, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g010740.2.1	Tomato	endoplasmic reticulum, extracellular	96.13	96.13
PGSC0003DMT400045436	Potato	extracellular	71.53	68.41
TraesCS4A01G385700.1	Wheat	cytosol	30.07	60.27
GSMUA_Achr10P...	Banana	cytosol	47.38	60.12
PGSC0003DMT400083135	Potato	extracellular	59.0	59.54
PGSC0003DMT400046723	Potato	endoplasmic reticulum, golgi, vacuole	58.77	59.31
GSMUA_Achr2P16830_001	Banana	endoplasmic reticulum, extracellular	57.86	57.99
PGSC0003DMT400039385	Potato	extracellular	51.71	56.33
GSMUA_Achr6P00830_001	Banana	endoplasmic reticulum, extracellular	56.04	56.29
GSMUA_Achr10P...	Banana	extracellular	49.89	56.15
PGSC0003DMT400003310	Potato	extracellular	56.95	56.05
TraesCS7A01G365700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	56.49	55.86
TraesCS7B01G261700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	56.49	55.86
TraesCS7D01G356700.1	Wheat	extracellular	56.49	55.86
PGSC0003DMT400027955	Potato	extracellular	50.8	55.61
PGSC0003DMT400032910	Potato	endoplasmic reticulum, extracellular, vacuole	50.8	55.34
EER88571	Sorghum	endoplasmic reticulum, plasma membrane	56.95	55.07
HORVU6Hr1G038630.1	Barley	extracellular	50.57	54.81
HORVU7Hr1G085860.1	Barley	endoplasmic reticulum, extracellular, vacuole	55.35	54.73
Os06t0583900-01	Rice	plasma membrane	55.81	54.69
PGSC0003DMT400069632	Potato	vacuole	50.34	54.57
Zm00001d046389_P007	Maize	endoplasmic reticulum, extracellular	53.76	54.5
PGSC0003DMT400014086	Potato	extracellular	55.35	54.36
EES06507	Sorghum	golgi, vacuole	54.9	54.16
Zm00001d000216_P001	Maize	golgi, vacuole	53.3	53.42
TraesCS7A01G086600.1	Wheat	endoplasmic reticulum, extracellular	54.44	53.35
OQU75805	Sorghum	mitochondrion	53.53	53.17
PGSC0003DMT400017863	Potato	extracellular	53.08	52.71
TraesCS6D01G170500.1	Wheat	golgi	51.03	52.71
TraesCS6B01G211900.1	Wheat	extracellular, golgi, vacuole	50.8	52.47
PGSC0003DMT400040893	Potato	endoplasmic reticulum, vacuole	52.16	52.16
Zm00001d036945_P001	Maize	endoplasmic reticulum	49.89	52.14
PGSC0003DMT400017862	Potato	endoplasmic reticulum, extracellular	47.15	52.14
Os02t0214400-01	Rice	plasma membrane	52.85	52.02
Os06t0144200-01	Rice	extracellular, plasma membrane	53.08	51.78
PGSC0003DMT400014085	Potato	extracellular, golgi	46.24	51.01
Zm00001d036158_P001	Maize	endoplasmic reticulum, extracellular, vacuole	51.71	50.11
Os06t0144900-01	Rice	mitochondrion	53.53	49.68
TraesCS6A01G184500.2	Wheat	extracellular, golgi, vacuole	52.39	49.68
PGSC0003DMT400042395	Potato	extracellular	43.05	49.61
EER87830	Sorghum	endoplasmic reticulum, extracellular, vacuole	52.16	49.25
PGSC0003DMT400076251	Potato	extracellular	49.89	48.88
PGSC0003DMT400051938	Potato	endoplasmic reticulum, extracellular	50.11	47.83
PGSC0003DMT400011046	Potato	mitochondrion	31.21	47.08
PGSC0003DMT400042396	Potato	endoplasmic reticulum, extracellular, vacuole	42.37	46.85
PGSC0003DMT400009869	Potato	cytosol	44.19	45.54
HORVU7Hr1G019500.1	Barley	mitochondrion	53.53	45.19
PGSC0003DMT400079776	Potato	plasma membrane	47.84	42.86
GSMUA_Achr7P08840_001	Banana	nucleus	58.54	38.36
PGSC0003DMT400060374	Potato	extracellular, plasma membrane, vacuole	47.38	36.43

Protein Annotations

KEGG:00040+4.2.2.2	EntrezGene:102579934	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334
UniProt:M0ZJT8	PFAM:PF00544	PFAM:PF04431	EnsemblPlantsGene:PGSC0003DMG402000859	PGSC:PGSC0003DMG402000859	EnsemblPlants:PGSC0003DMT400002241
PRINTS:PR00807	PANTHER:PTHR31683	PANTHER:PTHR31683:SF7	InterPro:Pec_lyase	InterPro:Pec_lyase_N	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000296ADF0
RefSeq:XP_006363934.1	SEG:seg	:	:	:	:

Description

Pectate lyase [Source:PGSC_GENE;Acc:PGSC0003DMG402000859]

Coordinates

chr1:-:13586392..13589704

Molecular Weight (calculated)

49346.0 Da

IEP (calculated)

8.132

GRAVY (calculated)

-0.349

Length

439 amino acids

Sequence
(BLAST)

001: MAFISGNSIL LILFIWLASL VPHIHARIAE FDAYLEKQAL EDLNSSLEAY THNPEEVTNA FNKEVGNALL KYKSLRRNLK EKNKCMATNP IDRCWRCDKN
101: WAENRMDLEE CARGFGHKTT GGKNGKYYVV TDESDDNVQE PKPGTLRHAV IQEEPLWIIF EKSMVIKLQQ ELMITSDKTI DGRGVAVHIA NGAGLTIQFV
201: HNVIIHNIRI QNIISTNGGM IRDSVNHIGL RTVSDGDGIS IFGSNHIWID HCTLSECTDG LVDAIMASTA ITISNCKFNH HNDVMLLGAT DAFPQDSIMQ
301: VTVAFNRFGE GLIQRMPRCR WGFFHVVNND YTHWQMYAIG GSAHPTIISQ GNRFKAADNP NTKQVTKRDY APESEWKKWQ WVSEGDSFLN GAYFVESGPQ
401: DKKKTALTKN HKIKFKPGSH AGRLTRFAGV LKCKPGIPC

Best Arabidopsis Sequence Match ( AT1G14420.1 )
(BLAST)

001: MAAAFLNLGG YVFVFFSSFL AIVAPQVRGN VAVFDSYWTQ RQSDALKQTI GSYDPHPLNV TNHFNYHVNI AVDASESRND TRRELTQVRS GRKTHKSSGK
101: CLAYNPIDNC WRCDRNWANN RKKLADCVLG FGRRTTGGKD GPIYVVKDAS DNDLINPKPG TLRHAVTRDG PLWIIFARSM IIKLQQELMI TSDKTIDGRG
201: ARVYIMEGAG LTLQFVNNVI IHNIYVKHIV PGNGGLIRDS EAHIGLRTKS DGDGISLFGA TNIWIDHVSM TRCADGMIDA IDGSTAVTIS NSHFTDHQEV
301: MLFGARDEHV IDKKMQITVA FNHFGKRLEQ RMPRCRYGTI HVVNNDYTHW EMYAIGGNMN PTIISQGNRF IAPPNEEAKQ ITKREYTPYG EWKSWNWQSE
401: GDYFLNGAYF VQSGKANAWS SKPKTPLPNK FTIRPKPGTM VRKLTMDAGV LGCKLGEAC

Arabidopsis Description

AT59Probable pectate lyase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S2]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.