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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 7
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 4
  • golgi 4
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, secretory
BaCelLo:secretory
EpiLoc:extracellular
iPSORT:secretory
MultiLoc:extracellular
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:cytosol
 plasma membrane: 28056797
msms PMID: 28056797 doi
N Yang, T Wang
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES06507 Sorghum golgi, vacuole 71.75 71.91
HORVU6Hr1G038630.1 Barley extracellular 61.44 67.65
TraesCS6D01G170500.1 Wheat golgi 63.0 66.12
TraesCS6B01G211900.1 Wheat extracellular, golgi, vacuole 61.88 64.94
Os06t0583900-01 Rice plasma membrane 64.57 64.29
TraesCS6A01G184500.2 Wheat extracellular, golgi, vacuole 64.13 61.77
GSMUA_Achr10P... Banana extracellular 53.36 61.03
GSMUA_Achr6P00830_001 Banana endoplasmic reticulum, extracellular 59.64 60.87
VIT_17s0000g05740.t01 Wine grape extracellular 57.4 59.67
GSMUA_Achr10P... Banana cytosol 45.29 58.38
KRH01130 Soybean extracellular 57.17 57.95
VIT_01s0026g01670.t01 Wine grape endoplasmic reticulum, extracellular, vacuole 57.4 57.79
GSMUA_Achr2P16830_001 Banana endoplasmic reticulum, extracellular 56.73 57.76
PGSC0003DMT400083135 Potato extracellular 56.05 57.47
VIT_14s0108g00030.t01 Wine grape endoplasmic reticulum, extracellular, vacuole 56.5 57.4
Solyc03g113150.2.1 Tomato endoplasmic reticulum, golgi, vacuole 55.83 57.24
PGSC0003DMT400046723 Potato endoplasmic reticulum, golgi, vacuole 55.83 57.24
Solyc06g071020.2.1 Tomato extracellular 55.61 57.01
PGSC0003DMT400003310 Potato extracellular 56.95 56.95
Solyc02g087670.2.1 Tomato extracellular 56.73 56.73
KRH63402 Soybean extracellular 54.93 56.32
VIT_01s0026g01680.t01 Wine grape endoplasmic reticulum, extracellular 54.71 55.08
PGSC0003DMT400014086 Potato extracellular 55.16 55.03
KRH18498 Soybean endoplasmic reticulum, extracellular, vacuole 54.48 54.85
KRG93502 Soybean extracellular 54.26 54.63
Solyc03g058890.2.1 Tomato extracellular 54.93 54.57
Os06t0144200-01 Rice extracellular, plasma membrane 54.04 53.56
KRH54508 Soybean extracellular 39.91 53.45
PGSC0003DMT400017863 Potato extracellular 52.69 53.17
PGSC0003DMT400002241 Potato extracellular 52.02 52.85
Solyc01g010740.2.1 Tomato endoplasmic reticulum, extracellular 52.02 52.85
PGSC0003DMT400017862 Potato endoplasmic reticulum, extracellular 46.86 52.64
KRH45851 Soybean extracellular 53.14 52.55
KRH74782 Soybean extracellular 52.47 52.23
AT1G14420.1 Thale cress endoplasmic reticulum 53.59 52.07
CDX96854 Canola endoplasmic reticulum, extracellular, plasma membrane 53.14 51.75
Bra016700.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 53.14 51.75
CDY68729 Canola endoplasmic reticulum, extracellular, plasma membrane 52.91 51.53
CDX74293 Canola endoplasmic reticulum, extracellular 54.26 51.38
CDX91953 Canola endoplasmic reticulum, extracellular 54.26 51.38
Bra026832.1-P Field mustard extracellular 52.02 51.33
KRH69345 Soybean extracellular 51.35 51.23
Bra001011.1-P Field mustard endoplasmic reticulum, extracellular 54.04 51.17
Os06t0144900-01 Rice mitochondrion 54.04 50.95
Bra026221.1-P Field mustard endoplasmic reticulum 52.02 50.66
AT5G15110.1 Thale cress endoplasmic reticulum, extracellular 53.59 50.64
CDY28691 Canola endoplasmic reticulum, extracellular, vacuole 53.14 50.53
CDY39314 Canola extracellular 51.57 50.11
CDX78607 Canola endoplasmic reticulum, extracellular 53.36 50.11
Bra006279.1-P Field mustard endoplasmic reticulum, extracellular 53.36 50.11
AT3G01270.1 Thale cress endoplasmic reticulum, extracellular 53.36 50.11
CDX70590 Canola endoplasmic reticulum, extracellular 53.36 50.11
Solyc03g058910.2.1 Tomato extracellular, golgi 44.39 49.75
PGSC0003DMT400014085 Potato extracellular, golgi 44.17 49.5
CDX85564 Canola extracellular 52.47 49.47
CDY63769 Canola extracellular 52.91 49.27
CDY04133 Canola extracellular 50.67 49.24
Bra017412.1-P Field mustard extracellular 50.67 49.24
CDY17432 Canola extracellular 50.45 49.02
Bra026583.1-P Field mustard endoplasmic reticulum, plasma membrane 50.22 49.02
Bra023504.1-P Field mustard extracellular 52.69 48.86
AT2G02720.1 Thale cress extracellular, vacuole 49.78 48.79
CDY66593 Canola endoplasmic reticulum, extracellular 54.26 48.5
CDX69550 Canola endoplasmic reticulum, extracellular 54.26 48.5
Bra008721.1-P Field mustard endoplasmic reticulum, extracellular 54.26 48.5
Solyc05g007080.2.1 Tomato extracellular 49.33 48.25
PGSC0003DMT400045436 Potato extracellular 49.33 47.93
CDX81636 Canola endoplasmic reticulum 51.79 47.73
CDY03043 Canola extracellular 49.1 47.71
Bra024811.1-P Field mustard extracellular 48.88 47.49
CDY45202 Canola extracellular 48.65 47.28
CDY53552 Canola extracellular 52.02 46.87
Os05t0293500-01 Rice extracellular 38.79 46.38
Os10t0457200-01 Rice plasma membrane 47.31 42.97
GSMUA_Achr7P08840_001 Banana nucleus 56.5 37.61
Solyc02g067450.2.1 Tomato extracellular 49.1 35.55
CDY04136 Canola mitochondrion, nucleus 0.45 1.32
Protein Annotations
KEGG:00040+4.2.2.2Gene3D:2.160.20.10MapMan:21.3.5.2EntrezGene:4328714EMBL:AK101009InterPro:AmbAllergen
ProteinID:BAD25039.1ProteinID:BAF08195.1ProteinID:BAS77621.1GO:GO:0003674GO:GO:0003824GO:GO:0005488
GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009987GO:GO:0016829
GO:GO:0030570GO:GO:0045490GO:GO:0046872InterPro:IPR012334EnsemblPlantsGene:Os02g0214400EnsemblPlants:Os02t0214400-01
PFAM:PF00544PFAM:PF04431PRINTS:PR00807PANTHER:PTHR31683PANTHER:PTHR31683:SF32InterPro:Pec_lyase
InterPro:Pec_lyase_NInterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulenceUniProt:Q6H8B0SMART:SM00656SUPFAM:SSF51126
SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI00003B431ERefSeq:XP_015625737.1SEG:seg:
Description
Similar to Pectate lyase homolog (EC 4.2.2.2) (Fragment). (Os02t0214400-01)
Coordinates
chr2:-:6399412..6402186
Molecular Weight (calculated)
49229.6 Da
IEP (calculated)
9.798
GRAVY (calculated)
-0.332
Length
446 amino acids
Sequence
(BLAST)
001: MDDQRLQWRK PGSFLLVAGV FLAAAAAVSN AGIGEFDEHW EKRRAAAEAA AEEVYKPDPF NVTNEFNHAV IRSTERGVLR RELSGKNSKY KGPCLATNPI
101: DRCWRCRKDW ATDRKRLARC AMGFGRGATG GVRGKIYVVT DPGDGDAANP RYGTLRWGAM QAAPLWITFA KSMVIRLTQE LLVASDKTID GRGAQVHIAR
201: GGAGITVQFA RNVIITSLHV HDVKHSDGGA VRDSPTHIGP RTRADGDGIS LFAATDVWVD HVSMSMCEDG LIDVVQGSTG VTISNSHFTN HNDVMLFGAS
301: DSYPQDKVMQ ITVAFNHFGR GLVQRMPRCR WGFFHVVNND YTHWLMYAIG GGMSPTILSQ GNRYIAPPNI AAKLITRHYA PEWEWKNWAW RSDGDLFMNG
401: AYFQASNGAI NRKVKGSDMV KPKPGSYVRR LTRFAGALSC RPGEPC
Best Arabidopsis Sequence Match ( AT1G14420.1 )
(BLAST)
001: MAAAFLNLGG YVFVFFSSFL AIVAPQVRGN VAVFDSYWTQ RQSDALKQTI GSYDPHPLNV TNHFNYHVNI AVDASESRND TRRELTQVRS GRKTHKSSGK
101: CLAYNPIDNC WRCDRNWANN RKKLADCVLG FGRRTTGGKD GPIYVVKDAS DNDLINPKPG TLRHAVTRDG PLWIIFARSM IIKLQQELMI TSDKTIDGRG
201: ARVYIMEGAG LTLQFVNNVI IHNIYVKHIV PGNGGLIRDS EAHIGLRTKS DGDGISLFGA TNIWIDHVSM TRCADGMIDA IDGSTAVTIS NSHFTDHQEV
301: MLFGARDEHV IDKKMQITVA FNHFGKRLEQ RMPRCRYGTI HVVNNDYTHW EMYAIGGNMN PTIISQGNRF IAPPNEEAKQ ITKREYTPYG EWKSWNWQSE
401: GDYFLNGAYF VQSGKANAWS SKPKTPLPNK FTIRPKPGTM VRKLTMDAGV LGCKLGEAC
Arabidopsis Description
AT59Probable pectate lyase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S2]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.