Factsheet for Os06t0144200-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

nucleus 2
plastid 2
endoplasmic reticulum 3
extracellular 3
vacuole 2
plasma membrane 2
golgi 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 25047395
plasma membrane: 28056797

msms PMID: 25047395 doi

JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G385700.1	Wheat	cytosol	39.78	81.74
Zm00001d000216_P001	Maize	golgi, vacuole	77.78	79.91
OQU75805	Sorghum	mitochondrion	75.56	76.92
TraesCS7A01G086600.1	Wheat	endoplasmic reticulum, extracellular	75.11	75.45
HORVU7Hr1G019500.1	Barley	mitochondrion	77.78	67.31
Os06t0144900-01	Rice	mitochondrion	70.22	66.81
GSMUA_Achr6P00830_001	Banana	endoplasmic reticulum, extracellular	57.78	59.5
VIT_01s0026g01670.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	58.22	59.14
GSMUA_Achr2P16830_001	Banana	endoplasmic reticulum, extracellular	57.56	59.13
VIT_14s0108g00030.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	57.33	58.77
VIT_17s0000g05740.t01	Wine grape	extracellular	55.78	58.51
GSMUA_Achr10P...	Banana	extracellular	50.44	58.21
PGSC0003DMT400046723	Potato	endoplasmic reticulum, golgi, vacuole	55.56	57.47
Solyc03g113150.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	55.33	57.24
GSMUA_Achr10P...	Banana	cytosol	44.0	57.23
Solyc06g071020.2.1	Tomato	extracellular	54.89	56.78
PGSC0003DMT400083135	Potato	extracellular	54.67	56.55
KRH63402	Soybean	extracellular	54.0	55.86
KRH45851	Soybean	extracellular	55.56	55.43
Os06t0583900-01	Rice	plasma membrane	55.11	55.36
KRH74782	Soybean	extracellular	54.67	54.91
VIT_01s0026g01680.t01	Wine grape	endoplasmic reticulum, extracellular	54.0	54.85
KRH69345	Soybean	extracellular	54.22	54.59
Solyc02g087670.2.1	Tomato	extracellular	53.56	54.04
Os02t0214400-01	Rice	plasma membrane	53.56	54.04
PGSC0003DMT400003310	Potato	extracellular	53.33	53.81
KRH54508	Soybean	extracellular	39.78	53.75
KRH18498	Soybean	endoplasmic reticulum, extracellular, vacuole	52.89	53.72
Solyc01g010740.2.1	Tomato	endoplasmic reticulum, extracellular	52.0	53.3
PGSC0003DMT400014086	Potato	extracellular	52.89	53.24
PGSC0003DMT400002241	Potato	extracellular	51.78	53.08
CDY68729	Canola	endoplasmic reticulum, extracellular, plasma membrane	53.78	52.84
PGSC0003DMT400017863	Potato	extracellular	51.78	52.71
CDX96854	Canola	endoplasmic reticulum, extracellular, plasma membrane	53.56	52.62
Bra016700.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	53.56	52.62
CDY04133	Canola	extracellular	53.56	52.51
AT1G14420.1	Thale cress	endoplasmic reticulum	53.56	52.51
Bra017412.1-P	Field mustard	extracellular	53.56	52.51
KRH01130	Soybean	extracellular	51.33	52.5
Solyc03g058890.2.1	Tomato	extracellular	52.22	52.34
CDY17432	Canola	extracellular	53.33	52.29
Bra026832.1-P	Field mustard	extracellular	52.22	51.99
Bra026221.1-P	Field mustard	endoplasmic reticulum	52.89	51.97
AT2G02720.1	Thale cress	extracellular, vacuole	52.22	51.65
Bra006279.1-P	Field mustard	endoplasmic reticulum, extracellular	54.44	51.58
CDX78607	Canola	endoplasmic reticulum, extracellular	54.44	51.58
Solyc03g058910.2.1	Tomato	extracellular, golgi	45.56	51.51
AT5G15110.1	Thale cress	endoplasmic reticulum, extracellular	54.0	51.48
Bra026583.1-P	Field mustard	endoplasmic reticulum, plasma membrane	52.22	51.42
CDY39314	Canola	extracellular	52.44	51.42
PGSC0003DMT400017862	Potato	endoplasmic reticulum, extracellular	45.33	51.39
PGSC0003DMT400014085	Potato	extracellular, golgi	45.33	51.26
CDX70590	Canola	endoplasmic reticulum, extracellular	54.0	51.16
KRG93502	Soybean	extracellular	50.22	51.02
CDY45202	Canola	extracellular	52.0	50.98
Bra024811.1-P	Field mustard	extracellular	51.78	50.76
CDY03043	Canola	extracellular	51.56	50.54
CDX85564	Canola	extracellular	52.89	50.32
CDY63769	Canola	extracellular	53.56	50.31
CDX91953	Canola	endoplasmic reticulum, extracellular	52.44	50.11
CDX74293	Canola	endoplasmic reticulum, extracellular	52.44	50.11
CDY28691	Canola	endoplasmic reticulum, extracellular, vacuole	52.0	49.89
Bra023504.1-P	Field mustard	extracellular	53.11	49.69
CDX69550	Canola	endoplasmic reticulum, extracellular	54.89	49.5
CDY66593	Canola	endoplasmic reticulum, extracellular	54.89	49.5
Bra008721.1-P	Field mustard	endoplasmic reticulum, extracellular	54.89	49.5
AT3G01270.1	Thale cress	endoplasmic reticulum, extracellular	52.22	49.47
Bra001011.1-P	Field mustard	endoplasmic reticulum, extracellular	51.78	49.47
PGSC0003DMT400045436	Potato	extracellular	49.56	48.58
Solyc05g007080.2.1	Tomato	extracellular	48.89	48.25
CDX81636	Canola	endoplasmic reticulum	51.56	47.93
CDY53552	Canola	extracellular	52.44	47.68
Os05t0293500-01	Rice	extracellular	37.11	44.77
Os10t0457200-01	Rice	plasma membrane	47.33	43.38
GSMUA_Achr7P08840_001	Banana	nucleus	56.0	37.61
Solyc02g067450.2.1	Tomato	extracellular	49.33	36.04
CDY04136	Canola	mitochondrion, nucleus	0.44	1.32

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	EntrezGene:4340099	InterPro:AmbAllergen	ProteinID:BAF18695.1
ProteinID:BAS96122.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490
GO:GO:0046872	InterPro:IPR012334	EnsemblPlantsGene:Os06g0144200	EnsemblPlants:Os06t0144200-01	PFAM:PF00544	PFAM:PF04431
PRINTS:PR00807	PANTHER:PTHR31683	PANTHER:PTHR31683:SF60	InterPro:Pec_lyase	InterPro:Pec_lyase_N	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	UniProt:Q0DEM8	SMART:SM00656	SUPFAM:SSF51126	TMHMM:TMhelix	UniParc:UPI0000E12683
RefSeq:XP_015642576.1	SEG:seg	:	:	:	:

Description

Similar to Pectate lyase homolog (EC 4.2.2.2). (Os06t0144200-01)

Coordinates

chr6:-:2336434..2338188

Molecular Weight (calculated)

50318.8 Da

IEP (calculated)

8.338

GRAVY (calculated)

-0.314

Length

450 amino acids

Sequence
(BLAST)

001: MDIYTTSHHS TIMAASSVTG SRRLCILFYL LTVVATVVTA ASAHTAHNAT ADEEYWEKRA EEARSFNRAA YVSDPVATLN RFNADVLRAT TRRSLARYTG
101: PCMATNPIDR CWRCRDDWAT DRKRLARCVR GFGHRTVGGA AGKIYVVTDA SDDEMVIPRK GTLRYGVIQD RPMWIVFARD MIIQLRQELI VNHNKTIDGR
201: GAQVHITGAQ ITLQGVQHVI IHNVHIHHSV PHGGGMIRDS KRHYGLRTRS DGDGISIMSS SNIWIDHVSM SNCSDGLIDA VSGSTAITIS NGHFTKHDHV
301: MLFGASNSDA QDEVMQITVA FNHFGKGLVP RCRFGFFHVV NNDYTHWLMY AIGGNMNPTI ISQGNRFIAP DDLNAKEVTK REYTPYDEYK EWVWKSQGDV
401: MMNGAFFNES GGQNERSYDQ LDFIPAKHGK YVGQLTKFAG TLNCHVGMPC

Best Arabidopsis Sequence Match ( AT5G15110.1 )
(BLAST)

001: MEMVRLSKLM FTFCIAVLIP TIRGNISELD EYWSQRADEA REFTLQAYHS DPYEIVDHFH ERHYDNSTDV TTPEEDGDAK PEEEEKEFIE MLGSSTNSTR
101: RSLRGKGKGK WSKLKGPCTA SNPIDKCWRC RSDWAKRRKK LTRCVRGFGH RTTGGKRGRI YVVTSNLDED MVNPKPGTLR HAVIQKEPLW IIFKNDMSIR
201: LNQELLINSH KTIDARGANV HVAHGAGITM QFVKNVVIHG LHIHHISESS GGMIRDSVDH FGMRTRADGD GLSIYGSSNI WLDHISMSKC QDGLIDAIVG
301: STGITISNSH FTHHNDVMLL GAQNTNEADK HMQVTVAYNH FGKGLVQRMP RIRWGFVHVV NNDYTHWELY AIGGSQGPTI LSHGNRFIAP PHKPHYREVT
401: KRDYASEDEW KHWNWRSDKD VFMNGAYFRQ SGNPQYKCAH TRQQMIKPKN GLAVSKLTKY AGALDCRVGR RC

Arabidopsis Description

Pectate lyase family protein [Source:TAIR;Acc:AT5G15110]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.