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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • nucleus 1
  • extracellular 9
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 4
  • golgi 4
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:nucleus, plastid, secretory
BaCelLo:nucleus
EpiLoc:extracellular
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:extracellular, plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400014086 Potato extracellular 95.77 96.2
Solyc02g087670.2.1 Tomato extracellular 71.71 72.2
Solyc06g071020.2.1 Tomato extracellular 59.47 61.38
VIT_01s0026g01670.t01 Wine grape endoplasmic reticulum, extracellular, vacuole 60.36 61.17
Solyc03g113150.2.1 Tomato endoplasmic reticulum, golgi, vacuole 59.24 61.15
VIT_14s0108g00030.t01 Wine grape endoplasmic reticulum, extracellular, vacuole 59.69 61.05
GSMUA_Achr6P00830_001 Banana endoplasmic reticulum, extracellular 58.35 59.95
GSMUA_Achr2P16830_001 Banana endoplasmic reticulum, extracellular 58.35 59.82
TraesCS4A01G385700.1 Wheat cytosol 28.29 57.99
GSMUA_Achr10P... Banana extracellular 50.33 57.95
Solyc05g014000.2.1 Tomato extracellular, nucleus 51.67 57.86
GSMUA_Achr10P... Banana cytosol 44.54 57.8
KRH74782 Soybean extracellular 57.46 57.59
KRH45851 Soybean extracellular 57.68 57.43
KRH69345 Soybean extracellular 57.02 57.27
Solyc03g058910.2.1 Tomato extracellular, golgi 49.89 56.28
VIT_01s0026g01680.t01 Wine grape endoplasmic reticulum, extracellular 55.46 56.21
Solyc03g111690.2.1 Tomato nucleus 50.11 55.83
HORVU6Hr1G038630.1 Barley extracellular 50.11 55.56
Solyc01g010740.2.1 Tomato endoplasmic reticulum, extracellular 54.12 55.35
Solyc02g093580.2.1 Tomato endoplasmic reticulum, extracellular, vacuole 49.67 55.2
Os02t0214400-01 Rice plasma membrane 54.57 54.93
AT1G14420.1 Thale cress endoplasmic reticulum 56.12 54.9
Bra026832.1-P Field mustard extracellular 55.23 54.87
CDY03043 Canola extracellular 55.9 54.68
CDX96854 Canola endoplasmic reticulum, extracellular, plasma membrane 55.68 54.59
Bra016700.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 55.68 54.59
CDY68729 Canola endoplasmic reticulum, extracellular, plasma membrane 55.68 54.59
CDY04133 Canola extracellular 55.68 54.47
CDY45202 Canola extracellular 55.68 54.47
Bra024811.1-P Field mustard extracellular 55.68 54.47
Bra017412.1-P Field mustard extracellular 55.46 54.25
AT2G02720.1 Thale cress extracellular, vacuole 54.79 54.07
Bra026583.1-P Field mustard endoplasmic reticulum, plasma membrane 55.01 54.05
Zm00001d046389_P007 Maize endoplasmic reticulum, extracellular 52.12 54.04
CDY17432 Canola extracellular 55.23 54.03
KRG93502 Soybean extracellular 53.23 53.95
KRH18498 Soybean endoplasmic reticulum, extracellular, vacuole 53.23 53.95
KRH01130 Soybean extracellular 52.78 53.86
OQU75805 Sorghum mitochondrion 53.01 53.85
TraesCS7B01G261700.1 Wheat endoplasmic reticulum, extracellular, vacuole 53.23 53.83
Bra026221.1-P Field mustard endoplasmic reticulum 54.79 53.71
EES06507 Sorghum golgi, vacuole 53.23 53.71
TraesCS7A01G365700.1 Wheat endoplasmic reticulum, extracellular, vacuole 53.01 53.6
TraesCS7D01G356700.1 Wheat extracellular 52.78 53.38
CDY39314 Canola extracellular 54.57 53.38
Os06t0583900-01 Rice plasma membrane 53.23 53.35
Zm00001d000216_P001 Maize golgi, vacuole 51.89 53.2
CDY28691 Canola endoplasmic reticulum, extracellular, vacuole 55.46 53.09
Solyc05g007080.2.1 Tomato extracellular 53.9 53.07
Solyc06g071840.1.1 Tomato vacuole 42.32 52.92
TraesCS7A01G086600.1 Wheat endoplasmic reticulum, extracellular 52.56 52.68
HORVU7Hr1G085860.1 Barley endoplasmic reticulum, extracellular, vacuole 51.89 52.48
CDX74293 Canola endoplasmic reticulum, extracellular 54.79 52.23
CDX91953 Canola endoplasmic reticulum, extracellular 54.79 52.23
Os06t0144200-01 Rice extracellular, plasma membrane 52.34 52.22
EER88571 Sorghum endoplasmic reticulum, plasma membrane 52.78 52.2
AT5G15110.1 Thale cress endoplasmic reticulum, extracellular 54.57 51.91
TraesCS6D01G170500.1 Wheat golgi 49.0 51.76
Solyc09g061890.2.1 Tomato endoplasmic reticulum, extracellular 50.56 51.71
Bra001011.1-P Field mustard endoplasmic reticulum, extracellular 54.12 51.59
CDX85564 Canola extracellular 54.34 51.59
Bra006279.1-P Field mustard endoplasmic reticulum, extracellular 54.57 51.58
CDX78607 Canola endoplasmic reticulum, extracellular 54.57 51.58
CDX70590 Canola endoplasmic reticulum, extracellular 54.57 51.58
Solyc06g083580.2.1 Tomato nucleus 49.67 51.38
TraesCS6B01G211900.1 Wheat extracellular, golgi, vacuole 48.55 51.29
Os06t0144900-01 Rice mitochondrion 53.9 51.16
CDY66593 Canola endoplasmic reticulum, extracellular 56.79 51.1
AT3G01270.1 Thale cress endoplasmic reticulum, extracellular 53.9 50.95
Bra008721.1-P Field mustard endoplasmic reticulum, extracellular 56.57 50.9
CDX69550 Canola endoplasmic reticulum, extracellular 56.57 50.9
Zm00001d036158_P001 Maize endoplasmic reticulum, extracellular, vacuole 51.22 50.77
CDY63769 Canola extracellular 54.12 50.73
Bra023504.1-P Field mustard extracellular 54.34 50.73
CDX81636 Canola endoplasmic reticulum 54.57 50.62
CDY53552 Canola extracellular 54.57 49.49
EER87830 Sorghum endoplasmic reticulum, extracellular, vacuole 51.22 49.46
Solyc09g091430.2.1 Tomato nucleus 49.44 49.22
Solyc11g008140.1.1 Tomato plasma membrane 47.66 47.66
TraesCS6A01G184500.2 Wheat extracellular, golgi, vacuole 49.0 47.52
Zm00001d036945_P001 Maize endoplasmic reticulum 44.1 47.14
HORVU7Hr1G019500.1 Barley mitochondrion 52.78 45.58
Solyc09g008380.2.1 Tomato nucleus 49.0 45.55
Solyc02g067450.2.1 Tomato extracellular 60.36 43.99
Solyc05g055510.2.1 Tomato plasma membrane 45.66 41.5
Solyc03g071570.2.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 45.88 40.87
GSMUA_Achr7P08840_001 Banana nucleus 58.8 39.4
Solyc02g080910.2.1 Tomato extracellular 41.2 24.37
CDY04136 Canola mitochondrion, nucleus 0.45 1.32
Protein Annotations
KEGG:00040+4.2.2.2Gene3D:2.160.20.10MapMan:21.3.5.2InterPro:AmbAllergenGO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009987
GO:GO:0016829GO:GO:0030570GO:GO:0045490GO:GO:0046872InterPro:IPR012334UniProt:K4BGT7
PFAM:PF00544PFAM:PF04431PRINTS:PR00807PANTHER:PTHR31683PANTHER:PTHR31683:SF7InterPro:Pec_lyase
InterPro:Pec_lyase_NInterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulenceSMART:SM00656SUPFAM:SSF51126SignalP:SignalP-TM
EnsemblPlantsGene:Solyc03g058890.2EnsemblPlants:Solyc03g058890.2.1TMHMM:TMhelixUniParc:UPI0002768CD3SEG:seg:
Description
Pectate lyase [Source:UniProtKB/TrEMBL;Acc:K4BGT7]
Coordinates
chr3:+:26591514..26594240
Molecular Weight (calculated)
50824.9 Da
IEP (calculated)
8.597
GRAVY (calculated)
-0.446
Length
449 amino acids
Sequence
(BLAST)
001: MGGPKIKYSF LFLCITFATI IPSLMAHIGH YDEVWRRRAE EAKEYARKIY EPHPENVTLA FNQKLRDTMK ELKKVKGTHN NSTRRGLGTK KYTGPCMVTN
101: PIDKCWRCDP NWADNRKKLA DCAMGFGSKA IGGKDGEFYV VTDNSDDYND PKPGTLRHAV IQKEPLWIIF KRGMNIRLHQ EMIMQSDKTI DARGVNVHIT
201: KGAGITLQYI KNVIIHGLHI HDIVEGNGGM VRDAVDHIGI RTKSDGDGIS IFGASNIWID HVSMQRCYDG LIDAVEGSTG ITISNGHFTD HNEVMLFGAS
301: DSSSIDQVMQ ITLAFNHFGK RLIQRMPRCR WGYIHVVNND YTHWNMYAIG GSMHPTIITQ GNRFIAPPDI FKKQVTKREY NPESVWMQWT WRSEGNLFMN
401: GAYFTESGDP EWSSKHKDLY DGISAAPAED VTWMTRFAGV LGCKPGKPC
Best Arabidopsis Sequence Match ( AT1G14420.1 )
(BLAST)
001: MAAAFLNLGG YVFVFFSSFL AIVAPQVRGN VAVFDSYWTQ RQSDALKQTI GSYDPHPLNV TNHFNYHVNI AVDASESRND TRRELTQVRS GRKTHKSSGK
101: CLAYNPIDNC WRCDRNWANN RKKLADCVLG FGRRTTGGKD GPIYVVKDAS DNDLINPKPG TLRHAVTRDG PLWIIFARSM IIKLQQELMI TSDKTIDGRG
201: ARVYIMEGAG LTLQFVNNVI IHNIYVKHIV PGNGGLIRDS EAHIGLRTKS DGDGISLFGA TNIWIDHVSM TRCADGMIDA IDGSTAVTIS NSHFTDHQEV
301: MLFGARDEHV IDKKMQITVA FNHFGKRLEQ RMPRCRYGTI HVVNNDYTHW EMYAIGGNMN PTIISQGNRF IAPPNEEAKQ ITKREYTPYG EWKSWNWQSE
401: GDYFLNGAYF VQSGKANAWS SKPKTPLPNK FTIRPKPGTM VRKLTMDAGV LGCKLGEAC
Arabidopsis Description
AT59Probable pectate lyase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S2]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.