Factsheet for Solyc02g093580.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 7
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032910	Potato	endoplasmic reticulum, extracellular, vacuole	98.27	98.51
VIT_14s0219g00230.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	82.43	82.63
KRH58231	Soybean	extracellular	80.94	80.94
KRG93976	Soybean	extracellular	80.69	80.69
Solyc05g014000.2.1	Tomato	extracellular, nucleus	77.23	77.81
Solyc03g111690.2.1	Tomato	nucleus	77.23	77.42
CDX83690	Canola	endoplasmic reticulum, extracellular, vacuole	77.23	75.73
Bra025274.1-P	Field mustard	extracellular	76.98	75.49
CDY00156	Canola	extracellular, plastid	76.49	75.0
Bra039081.1-P	Field mustard	extracellular, plastid	76.24	74.76
CDY20049	Canola	plastid, vacuole	75.99	74.51
Solyc06g071840.1.1	Tomato	vacuole	66.09	74.37
AT3G27400.2	Thale cress	endoplasmic reticulum, vacuole	76.24	74.04
CDY34149	Canola	extracellular	65.35	73.54
Bra033008.1-P	Field mustard	extracellular	72.28	73.37
CDY03964	Canola	extracellular	74.75	73.3
Solyc06g083580.2.1	Tomato	nucleus	66.58	61.98
Solyc09g061890.2.1	Tomato	endoplasmic reticulum, extracellular	67.33	61.96
Solyc09g091430.2.1	Tomato	nucleus	67.82	60.75
Solyc11g008140.1.1	Tomato	plasma membrane	60.64	54.57
Solyc06g071020.2.1	Tomato	extracellular	55.2	51.26
Solyc01g010740.2.1	Tomato	endoplasmic reticulum, extracellular	54.46	50.11
Solyc03g058890.2.1	Tomato	extracellular	55.2	49.67
Solyc05g055510.2.1	Tomato	plasma membrane	60.4	49.39
Solyc03g113150.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	51.73	48.05
Solyc09g008380.2.1	Tomato	nucleus	57.43	48.03
Solyc03g071570.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	59.65	47.82
Solyc03g058910.2.1	Tomato	extracellular, golgi	47.03	47.74
Solyc02g087670.2.1	Tomato	extracellular	52.48	47.53
Solyc05g007080.2.1	Tomato	extracellular	53.22	47.15
Solyc02g067450.2.1	Tomato	extracellular	48.76	31.98
Solyc02g080910.2.1	Tomato	extracellular	52.72	28.06

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872
InterPro:IPR012334	UniProt:K4BDF4	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683	PANTHER:PTHR31683:SF29
InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126	SignalP:SignalP-noTM
EnsemblPlantsGene:Solyc02g093580.2	EnsemblPlants:Solyc02g093580.2.1	UniParc:UPI00027686EB	SEG:seg	:	:

Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:K4BDF4]

Coordinates

chr2:-:54392803..54394803

Molecular Weight (calculated)

44569.5 Da

IEP (calculated)

7.944

GRAVY (calculated)

-0.392

Length

404 amino acids

Sequence
(BLAST)

001: MSTLFFTFSL LLLAPLLVIS SIQDPELVVQ DVHRSINASL TRRNLGYLSC GSGNPIDDCW RCNPNWEKNR QRLADCAIGF GKNAIGGKNG RIYVVTDSGN
101: DDPVNPKPGT LRHAVIQDEP LWIIFKRDMV IQLKQELVMN SYKTIDGRGA SVHISGGPCI TIHHTSNIII HGINIHDCKQ SGNGNIRDSP NHSGWWDVSD
201: GDGISIFGGK NIWVDHCSLS NCHDGLIDAI HGSTAITISN NYFTHHDKVM LLGHSDSFTQ DKGMQVTVAF NHFGEGLVQR MPRCRHGYFH VVNNDYTHWE
301: MYAIGGSAAP TINSQGNRFL APNEKYRKEV TKHEDAPESQ WRSWNWRSEG DLMLNGAYFR QTGAGASSSS TYARASSLSA RPSSLVGSIT TNAGPVNCKK
401: GSRC

Best Arabidopsis Sequence Match ( AT5G63180.1 )
(BLAST)

001: MFRPNSLLIP SNLSTTKSQR NTMLNSSYLS FALIFFCCIL FSALASSLPV SDPELVVEEV HRKINESISR RKLGFFSCGS GNPIDDCWRC DKDWEKNRKR
101: LADCGIGFGK NAIGGRDGEI YVVTDPGNDD PVNPRPGTLR YAVIQDEPLW IIFKRDMTIQ LKEELIMNSF KTLDGRGASV HISGGPCITI QYVTNIIIHG
201: LHIHDCKQGG NTYVRDSPEH YGYRTVSDGD GVSIFGGSHV WVDHCSLSNC NDGLIDAIRG STAITISNNY LTHHNKVMLL GHSDTYEQDK NMQVTIAFNH
301: FGEGLVQRMP RCRHGYFHVV NNDYTHWEMY AIGGSANPTI NSQGNRFLAP DDSSSKEVTK HEDAPEDEWR NWNWRSEGDL LLNGAFFTYS GAGPAKSSSY
401: SKASSLAARP SSHVGEITIA SGALSCKRGS HC

Arabidopsis Description

Probable pectate lyase 22 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z25]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.