Factsheet for Bra039081.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

nucleus 2
plastid 4
vacuole 5
extracellular 6
endoplasmic reticulum 4
plasma membrane 4
golgi 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	plastid
Plant-mPloc:	extracellular, golgi, mitochondrion, nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00156	Canola	extracellular, plastid	99.76	99.76
CDY20049	Canola	plastid, vacuole	99.76	99.76
Bra025274.1-P	Field mustard	extracellular	90.05	90.05
Bra033008.1-P	Field mustard	extracellular	86.89	89.95
AT3G27400.2	Thale cress	endoplasmic reticulum, vacuole	89.81	88.94
KRH58231	Soybean	extracellular	75.0	76.49
KRG93976	Soybean	extracellular	75.0	76.49
Solyc02g093580.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	74.76	76.24
PGSC0003DMT400032910	Potato	endoplasmic reticulum, extracellular, vacuole	74.51	76.18
VIT_14s0219g00230.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	74.51	76.18
Bra010482.1-P	Field mustard	endoplasmic reticulum, extracellular	72.57	73.65
Bra013833.1-P	Field mustard	endoplasmic reticulum, vacuole	72.33	73.4
Bra004254.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	70.15	71.18
Bra004073.1-P	Field mustard	extracellular	70.15	71.01
Bra038614.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	70.87	70.7
Bra033980.1-P	Field mustard	extracellular	69.17	70.2
Bra035852.1-P	Field mustard	extracellular	69.66	70.0
Bra019209.1-P	Field mustard	endoplasmic reticulum, extracellular	66.5	65.87
Bra029614.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	62.38	63.46
Bra036155.1-P	Field mustard	extracellular	63.59	62.68
Bra032696.1-P	Field mustard	endoplasmic reticulum, extracellular	62.62	62.47
Bra020672.1-P	Field mustard	extracellular	63.11	62.35
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	63.59	61.94
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	63.11	60.32
Bra015341.1-P	Field mustard	extracellular	62.86	60.09
Bra032494.1-P	Field mustard	extracellular	62.86	60.09
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	64.08	58.54
Bra015000.1-P	Field mustard	golgi, plasma membrane	60.44	55.7
Bra019729.1-P	Field mustard	extracellular	49.03	54.59
Bra035588.1-P	Field mustard	extracellular	50.97	54.12
Bra019730.1-P	Field mustard	extracellular	50.49	54.03
Bra015070.1-P	Field mustard	endoplasmic reticulum, extracellular	61.89	51.83
Bra013585.1-P	Field mustard	extracellular	48.54	50.89
Bra020859.1-P	Field mustard	extracellular	47.82	49.87
Bra006976.1-P	Field mustard	cytosol	54.61	49.23
Bra012756.1-P	Field mustard	extracellular	45.15	47.81
Bra026832.1-P	Field mustard	extracellular	52.18	47.57
Bra028549.1-P	Field mustard	plasma membrane	55.34	46.53
Bra016700.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	51.21	46.07
Bra017412.1-P	Field mustard	extracellular	51.21	45.97
Bra001011.1-P	Field mustard	endoplasmic reticulum, extracellular	52.18	45.65
Bra024811.1-P	Field mustard	extracellular	50.73	45.53
Bra006279.1-P	Field mustard	endoplasmic reticulum, extracellular	52.43	45.47
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	53.88	45.31
Bra026583.1-P	Field mustard	endoplasmic reticulum, plasma membrane	50.24	45.3
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	53.88	45.21
Bra026221.1-P	Field mustard	endoplasmic reticulum	50.24	45.2
Bra023504.1-P	Field mustard	extracellular	52.18	44.7
Bra005799.1-P	Field mustard	extracellular, golgi	54.13	43.55
Bra008721.1-P	Field mustard	endoplasmic reticulum, extracellular	52.43	43.29
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	53.88	42.37

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	EnsemblPlantsGene:Bra039081	EnsemblPlants:Bra039081.1
EnsemblPlants:Bra039081.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490
GO:GO:0046872	InterPro:IPR012334	UniProt:M4FDB0	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF29	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126
UniParc:UPI0002541B92	SEG:seg	:	:	:	:

Description

AT3G27400 (E=1e-220) | pectate lyase family protein

Coordinates

chrA09:+:1225272..1228816

Molecular Weight (calculated)

45576.6 Da

IEP (calculated)

7.123

GRAVY (calculated)

-0.392

Length

412 amino acids

Sequence
(BLAST)

001: MFSYSSNPFV YTFIFLLSIG NRIAFSSSSS PQAQDPKLVV DEVNRSVFNA SRRSLAYLSC RTGNPIDDCW RCDPNWDTNR QRLADCAIGF GKNAIGGRDG
101: RIYVVTDPGN DDPVNPIPGT LRHAVTQEEP LWIIFKRDMV IKLQKELIIT SFKTIDGRGA SVHITDGPCL KIHEKTNIII HGINIHDCKP GPGGMIRDGP
201: DHTGMWIPSD GDAVAIFGGK NVWIDHCSLS NCDDGLIDAI HGSTAITISN NHMTHHDKVM LLGHSDSYTE DKNMQVTIAF NHFGEGLVQR MPRCRHGYFH
301: VVNNDYTHWE MYAIGGSASP TIYSQGNRFL APDTRFNKEV TKHEDAPESQ WRDWNWRSEG DMLLNGAYFR QSGAGAPSTY ARASSLSARP SSLVGSITTT
401: AGALSCRRGG HC

Best Arabidopsis Sequence Match ( AT3G27400.1 )
(BLAST)

001: MVSYSNNHFA YAFLLLLTIG NTLAFSSSLP DHVQDPNLVV DDVNRSVFNA SRRSLAYLSC RTGNPIDDCW RCDPNWETNR QRLADCAIGF GKNAIGGRKG
101: RIYVVTDPAN DDPVNPRPGT LRYAVTQEEP LWIIFKRDMV IRLKKELIIT SFKTIDGRGS SVHITDGPCL KIHYATNIII HGINIHDCKP GSGGMIKDGP
201: HHTGWWMQSD GDAVAIFGGK HVWIDHCSLS NCDDGLIDAI HGSTAITISN NHMTHHDKVM LLGHSDSYTQ DKNMQVTIAF NHFGEGLVQR MPRCRHGYFH
301: VVNNDYTHWE MYAIGGSASP TIYSQGNRFL APNTRFNKEV TKHEDAPESK WRDWNWRSEG DMLLNGAYFR ESGAEAPSTY ARASSLSARP SSLVGSITTT
401: AGTLSCRRGR RC

Arabidopsis Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNU6]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.