Factsheet for Bra006976.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 2
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78152	Canola	extracellular	99.78	95.8
CDX73573	Canola	extracellular	98.25	94.33
Bra028549.1-P	Field mustard	plasma membrane	92.12	85.92
AT3G53190.1	Thale cress	extracellular	90.37	85.51
KRH67761	Soybean	endoplasmic reticulum, extracellular, vacuole	73.96	71.91
PGSC0003DMT400009869	Potato	cytosol	63.9	68.54
KRH19954	Soybean	endoplasmic reticulum, extracellular, plasma membrane	70.24	67.3
VIT_08s0007g04820.t01	Wine grape	plastid	70.68	66.05
Solyc09g008380.2.1	Tomato	nucleus	67.83	64.18
Bra013833.1-P	Field mustard	endoplasmic reticulum, vacuole	53.17	59.85
Bra010482.1-P	Field mustard	endoplasmic reticulum, extracellular	52.74	59.36
Bra035852.1-P	Field mustard	extracellular	52.95	59.02
Bra038614.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	52.95	58.6
Bra032696.1-P	Field mustard	endoplasmic reticulum, extracellular	52.52	58.11
Bra020672.1-P	Field mustard	extracellular	52.95	58.03
Bra004073.1-P	Field mustard	extracellular	51.64	57.99
Bra033980.1-P	Field mustard	extracellular	51.42	57.88
TraesCS1B01G161000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	59.96	57.56
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	53.17	57.45
Bra036155.1-P	Field mustard	extracellular	52.52	57.42
TraesCS1A01G143600.1	Wheat	extracellular	60.18	57.29
Bra029614.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	50.77	57.28
Bra004254.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	50.77	57.14
Bra032494.1-P	Field mustard	extracellular	53.83	57.08
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	53.83	57.08
TraesCS1D01G142400.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	59.52	56.9
Bra015341.1-P	Field mustard	extracellular	53.61	56.84
KXG38421	Sorghum	extracellular	59.08	56.02
HORVU1Hr1G038220.7	Barley	endoplasmic reticulum, extracellular	59.52	55.85
Zm00001d032806_P001	Maize	cytosol, plastid	52.74	55.79
GSMUA_Achr4P25120_001	Banana	extracellular	54.49	55.7
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	54.92	55.65
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	59.3	55.19
Bra025274.1-P	Field mustard	extracellular	49.23	54.61
Bra039081.1-P	Field mustard	extracellular, plastid	49.23	54.61
Os10t0457200-01	Rice	plasma membrane	58.64	54.58
Bra019209.1-P	Field mustard	endoplasmic reticulum, extracellular	49.23	54.09
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	57.55	53.67
Bra015000.1-P	Field mustard	golgi, plasma membrane	51.64	52.8
Bra033008.1-P	Field mustard	extracellular	45.95	52.76
Bra035588.1-P	Field mustard	extracellular	44.2	52.06
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	57.55	50.19
Bra005799.1-P	Field mustard	extracellular, golgi	55.8	49.8
GSMUA_Achr1P03320_001	Banana	plasma membrane	54.49	48.73
Bra019729.1-P	Field mustard	extracellular	39.39	48.65
Bra015070.1-P	Field mustard	endoplasmic reticulum, extracellular	52.08	48.37
Bra019730.1-P	Field mustard	extracellular	40.7	48.31
Bra013585.1-P	Field mustard	extracellular	40.7	47.33
Bra020859.1-P	Field mustard	extracellular	40.48	46.84
Bra026832.1-P	Field mustard	extracellular	44.64	45.13
Bra016700.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	44.42	44.32
Bra024811.1-P	Field mustard	extracellular	43.76	43.57
Bra026221.1-P	Field mustard	endoplasmic reticulum	43.54	43.45
Bra017412.1-P	Field mustard	extracellular	43.54	43.36
Bra026583.1-P	Field mustard	endoplasmic reticulum, plasma membrane	42.45	42.45
Bra006279.1-P	Field mustard	endoplasmic reticulum, extracellular	43.76	42.11
Bra001011.1-P	Field mustard	endoplasmic reticulum, extracellular	43.33	42.04
Bra012756.1-P	Field mustard	extracellular	35.45	41.65
Bra023504.1-P	Field mustard	extracellular	42.67	40.54
Bra008721.1-P	Field mustard	endoplasmic reticulum, extracellular	44.2	40.48

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	EnsemblPlantsGene:Bra006976	EnsemblPlants:Bra006976.1
EnsemblPlants:Bra006976.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334	UniProt:M4CRY4
PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683	PANTHER:PTHR31683:SF21	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126	TMHMM:TMhelix	UniParc:UPI0002542F13	SEG:seg

Description

AT3G53190 (E=7e-231) | pectate lyase family protein

Coordinates

chrA09:+:26622001..26625214

Molecular Weight (calculated)

50781.8 Da

IEP (calculated)

6.372

GRAVY (calculated)

-0.317

Length

457 amino acids

Sequence
(BLAST)

001: MGFAMLNKTL LLIPHPDPEL VAHDVHWRVN ASIWRRQAMD TTDQAGSNQC FTGNPIDDCW KCDTNWPNNR QRLADCGIGF GQYALGGKGG RFYFVTDSSD
101: DDVVDPKPGT LRYGVIQVEP LWIVFPSNMM IKLKHELIFN SYKTLDGRGA NVHIVGGGCI TLQYVSNIII HNIHIHHCHP SGNTNIRSSP THYGLRTESD
201: GDGISIFGSK DIWIDHCSLS RCKDGLIDAV MGSTGITISN NFFSHHNEVM LLGHSDHYEP DSGMQVTIAF NHFGEKLVQR MPRCRRGYIH VVNNDFTQWE
301: MYAIGGSGNP TINSQGNRYT APTNPFAKEV TKRVETPDGD WKGWNWRSEG DILVNGAFFV ASGEGAEMRY EKAYSVDPKS ASFIDQITFH CGVLGVGGRN
401: NNLGMWTTTG SEGSGGLDSY NDYTDEMSGT GSTNRLSFSI IVIAFMFNLI SYSFMLL

Best Arabidopsis Sequence Match ( AT3G53190.1 )
(BLAST)

001: MMLQRSCIVL FFSLFLLVPQ MVFSMLNRTL LLIPHPDPEL VAYQVQWKVN ASITRRQALD TTDQAGSTPC ITGNPIDDCW KCDPNWPNNR QGLADCGIGF
101: GQYALGGKGG QFYFVTDSSD DDAVNPKPGT LRYGVIQEEP LWIVFPSNMM IKLKQELIFN SYKTLDGRGA NVHIVGGGCI TLQYVSNIII HNIHIHHCYQ
201: SGNTNVRSSP THYGFRTKSD GDGISIFGSK DIWIDHCSLS RCKDGLIDAV MGSTGITISN NFFSHHNEVM LLGHSDHYEP DSGMQVTIAF NHFGEKLIQR
301: MPRCRRGYIH VVNNDFTQWE MYAIGGSGNP TINSQGNRYT APTNPFAKEV TKRVETPDGD WKGWNWRSEG DILVNGAFFV ASGEGAEMRY EKAYSVEPKS
401: ASFITQITFH SGVLGVGGRN NNLGMWTTTG SEGTSGLDSY NDYTDEMSGA GSTNRLSFSV LVFLLSSISY LVVFTSSTQM FML

Arabidopsis Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:Q56XU8]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.