CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19954	Soybean	endoplasmic reticulum, extracellular, plasma membrane	80.64	79.45
Bra006976.1-P	Field mustard	cytosol	71.91	73.96
CDX78152	Canola	extracellular	73.62	72.69
CDX73573	Canola	extracellular	73.4	72.48
AT3G53190.1	Thale cress	extracellular	72.98	71.01
CDX67560	Canola	plasma membrane	73.62	70.61
Bra028549.1-P	Field mustard	plasma membrane	73.4	70.41
PGSC0003DMT400009869	Potato	cytosol	62.98	69.48
VIT_08s0007g04820.t01	Wine grape	plastid	70.64	67.89
Solyc09g008380.2.1	Tomato	nucleus	68.09	66.25
KRH03893	Soybean	nucleus	54.89	63.55
CDY13312	Canola	plasma membrane	71.7	62.87
KRH57176	Soybean	nucleus	54.26	62.81
KRH58231	Soybean	extracellular	53.83	62.62
KRH31375	Soybean	nucleus	52.77	61.69
KRG93976	Soybean	extracellular	52.98	61.63
KRG90767	Soybean	extracellular	64.89	60.76
KRG97506	Soybean	endoplasmic reticulum, golgi	51.91	60.25
KRH54276	Soybean	endoplasmic reticulum, golgi, vacuole	51.91	59.8
KRH63675	Soybean	endoplasmic reticulum, extracellular, vacuole	51.7	59.56
KRH35994	Soybean	extracellular	63.62	59.33
TraesCS1B01G161000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	59.15	58.4
TraesCS1D01G142400.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	58.94	57.95
GSMUA_Achr4P25120_001	Banana	extracellular	55.11	57.94
TraesCS1A01G143600.1	Wheat	extracellular	58.94	57.71
KXG38421	Sorghum	extracellular	58.94	57.47
KRG97507	Soybean	endoplasmic reticulum, extracellular	47.45	56.89
KRG90246	Soybean	nucleus	53.62	56.25
KRH33474	Soybean	nucleus	53.62	56.0
KRH46795	Soybean	nucleus	53.62	55.88
KRG99852	Soybean	nucleus	53.4	55.65
KRH31373	Soybean	extracellular	43.83	55.53
Os10t0457200-01	Rice	plasma membrane	57.87	55.4
Zm00001d032806_P001	Maize	cytosol, plastid	50.85	55.32
HORVU1Hr1G038220.7	Barley	endoplasmic reticulum, extracellular	57.02	55.03
KRH11474	Soybean	extracellular	42.55	53.62
KRH02031	Soybean	extracellular	42.98	50.75
GSMUA_Achr1P03320_001	Banana	plasma membrane	55.11	50.68
KRH54508	Soybean	extracellular	35.53	50.15
KRH36487	Soybean	extracellular	30.0	49.47
KRH63402	Soybean	extracellular	45.32	48.97
KRH36488	Soybean	extracellular	41.28	48.87
KRH45851	Soybean	extracellular	45.32	47.23
KRH18498	Soybean	endoplasmic reticulum, extracellular, vacuole	44.47	47.18
KRH74782	Soybean	extracellular	44.47	46.65
KRH69345	Soybean	extracellular	44.04	46.31
KRH01130	Soybean	extracellular	43.19	46.14
KRG93502	Soybean	extracellular	43.4	46.05

Protein Annotations

KEGG:00040+4.2.2.2	EntrezGene:100775595	Gene3D:2.160.20.10	MapMan:21.3.5.2	EMBL:ACUP02002078	InterPro:AmbAllergen
EnsemblPlantsGene:GLYMA_03G185400	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	UniProt:I1JPR5	InterPro:IPR012334
EnsemblPlants:KRH67761	ProteinID:KRH67761	ProteinID:KRH67761.1	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF21	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002337082	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:39724331..39727956

Molecular Weight (calculated)

52124.9 Da

IEP (calculated)

5.678

GRAVY (calculated)

-0.231

Length

470 amino acids

Sequence
(BLAST)

001: MLLQTTCIFL LSVLLSSFSP LGTAMLNLTL PGAHPDPEAV AHEVHRKVNA SIARREMLSV SEKDGSSCLT GNPIDDCWKC DPDWPNNRQR LADCVIGFGQ
101: YAKGGKGGEF YVVTDSSDDD PVNPKPGTLR YAVIQNEPLW IVFPSNMMIK LSQELIFNSY KTIDGRGADV HIVGGGCITL QFISNVIIHN IHIHHCHPSG
201: NTNVRSSPEH YGFRTESDGD GISIFGSKDI WIDHCTLSRC KDGLIDAVMG STGITISNNM LSHHNEVMLL GHSDDYLPDS GMQVTIAFNH FGEKLVQRMP
301: RCRRGYIHVV NNDFTEWEMY AIGGSGEPTI NSQGNRYMAP ENPFAKEVTK RVDTQQSKWK GWNWRSEGDI LLNGAFFVAS GEELEVKYEK AYSVQPKSAD
401: RISFLTMSAG VLGNARDNNL GMWSRGPADD TTESGMEYTD DMSTTATMLL SSFLLLFFLS YTILRLTVIL

Best Arabidopsis Sequence Match ( AT3G53190.1 )
(BLAST)

001: MMLQRSCIVL FFSLFLLVPQ MVFSMLNRTL LLIPHPDPEL VAYQVQWKVN ASITRRQALD TTDQAGSTPC ITGNPIDDCW KCDPNWPNNR QGLADCGIGF
101: GQYALGGKGG QFYFVTDSSD DDAVNPKPGT LRYGVIQEEP LWIVFPSNMM IKLKQELIFN SYKTLDGRGA NVHIVGGGCI TLQYVSNIII HNIHIHHCYQ
201: SGNTNVRSSP THYGFRTKSD GDGISIFGSK DIWIDHCSLS RCKDGLIDAV MGSTGITISN NFFSHHNEVM LLGHSDHYEP DSGMQVTIAF NHFGEKLIQR
301: MPRCRRGYIH VVNNDFTQWE MYAIGGSGNP TINSQGNRYT APTNPFAKEV TKRVETPDGD WKGWNWRSEG DILVNGAFFV ASGEGAEMRY EKAYSVEPKS
401: ASFITQITFH SGVLGVGGRN NNLGMWTTTG SEGTSGLDSY NDYTDEMSGA GSTNRLSFSV LVFLLSSISY LVVFTSSTQM FML

Arabidopsis Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:Q56XU8]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.