CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 5
plasma membrane 7
golgi 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67761	Soybean	endoplasmic reticulum, extracellular, vacuole	79.45	80.64
Bra006976.1-P	Field mustard	cytosol	67.3	70.24
CDX78152	Canola	extracellular	68.97	69.12
CDX73573	Canola	extracellular	68.76	68.91
AT3G53190.1	Thale cress	extracellular	68.97	68.12
CDX67560	Canola	plasma membrane	69.18	67.35
Bra028549.1-P	Field mustard	plasma membrane	68.97	67.14
PGSC0003DMT400009869	Potato	cytosol	59.33	66.43
VIT_08s0007g04820.t01	Wine grape	plastid	66.67	65.03
KRH03893	Soybean	nucleus	54.93	64.53
Solyc09g008380.2.1	Tomato	nucleus	65.2	64.39
KRH57176	Soybean	nucleus	54.72	64.29
KRH58231	Soybean	extracellular	52.2	61.63
KRG93976	Soybean	extracellular	51.78	61.14
KRH54276	Soybean	endoplasmic reticulum, golgi, vacuole	52.2	61.03
KRG90767	Soybean	extracellular	63.94	60.76
KRH63675	Soybean	endoplasmic reticulum, extracellular, vacuole	51.78	60.54
CDY13312	Canola	plasma membrane	67.92	60.45
KRH31375	Soybean	nucleus	50.52	59.95
KRH35994	Soybean	extracellular	63.31	59.92
KRG97506	Soybean	endoplasmic reticulum, golgi	50.73	59.75
TraesCS1B01G161000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	57.44	57.56
KXG38421	Sorghum	extracellular	58.07	57.47
TraesCS1D01G142400.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	57.44	57.32
KRG97507	Soybean	endoplasmic reticulum, extracellular	46.96	57.14
TraesCS1A01G143600.1	Wheat	extracellular	57.44	57.08
Zm00001d032806_P001	Maize	cytosol, plastid	51.57	56.94
Os10t0457200-01	Rice	plasma membrane	58.28	56.62
GSMUA_Achr4P25120_001	Banana	extracellular	52.62	56.15
KRH31373	Soybean	extracellular	43.61	56.06
KRH46795	Soybean	nucleus	52.2	55.21
KRG99852	Soybean	nucleus	51.99	54.99
KRG90246	Soybean	nucleus	51.57	54.91
KRH33474	Soybean	nucleus	51.78	54.89
HORVU1Hr1G038220.7	Barley	endoplasmic reticulum, extracellular	55.56	54.41
KRH11474	Soybean	extracellular	42.35	54.16
KRH02031	Soybean	extracellular	43.4	52.01
KRH36488	Soybean	extracellular	42.35	50.88
KRH36487	Soybean	extracellular	30.4	50.88
GSMUA_Achr1P03320_001	Banana	plasma membrane	52.83	49.32
KRH54508	Soybean	extracellular	34.38	49.25
KRH63402	Soybean	extracellular	44.65	48.97
KRH18498	Soybean	endoplasmic reticulum, extracellular, vacuole	43.61	46.95
KRH45851	Soybean	extracellular	44.23	46.78
KRH74782	Soybean	extracellular	43.4	46.21
KRG93502	Soybean	extracellular	42.56	45.82
KRH01130	Soybean	extracellular	41.93	45.45
KRH69345	Soybean	extracellular	42.56	45.41

Protein Annotations

KEGG:00040+4.2.2.2	EntrezGene:100815062	Gene3D:2.160.20.10	MapMan:21.3.5.2	UniProt:A0A0R0GUZ0	EMBL:ACUP02008218
InterPro:AmbAllergen	EnsemblPlantsGene:GLYMA_13G145900	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570
GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334	EnsemblPlants:KRH19954	ProteinID:KRH19954	ProteinID:KRH19954.1
PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683	PANTHER:PTHR31683:SF21	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0001890C22
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:25889883..25895793

Molecular Weight (calculated)

52472.2 Da

IEP (calculated)

6.372

GRAVY (calculated)

-0.249

Length

477 amino acids

Sequence
(BLAST)

001: MLQTTCIILF SVVAIFLPHG TAMLNLTLPG QHPDPEAVAR EVHRKVNASM ARREMLGVSE KEVASCLTGN PIDDCWKCDP DWANNRQRLA DCAIGFGQNA
101: KGGKGGQFYI VTDSSDEDPV NPKPGTLRYA VIQNEPLWIV FPSNMMIKLS QELIFNSYKT IDGRGADVHI VGGGCITLQY ISNVIIHNIH IHHCHPSGNA
201: NVRSSPEHYG YRTESDGDGI SIFGSRDIWI DHCTLSRCKD GLIDAVMGSS AITISNNHFS HHNDVMLLGH SDHYLPDSGM QVTIGFNHFG EGLVQRMPRC
301: RRGYIHVVNN DFTRWEMYAI GGSAGPTINS QGNRYTAPED PYAKQVTKRL DAGEGEWSGW NWRSEGDVLL NGAFFVASGA VAEPNYQNAY STQPKNVDRI
401: SLLTMSAGVL GVARDNNLGM WIRGPNDGTV YFSDSGPEYT DEMSRSTMPL LPSRILILVS ALLCFLGHTT TLTTLPN

Best Arabidopsis Sequence Match ( AT3G53190.1 )
(BLAST)

001: MMLQRSCIVL FFSLFLLVPQ MVFSMLNRTL LLIPHPDPEL VAYQVQWKVN ASITRRQALD TTDQAGSTPC ITGNPIDDCW KCDPNWPNNR QGLADCGIGF
101: GQYALGGKGG QFYFVTDSSD DDAVNPKPGT LRYGVIQEEP LWIVFPSNMM IKLKQELIFN SYKTLDGRGA NVHIVGGGCI TLQYVSNIII HNIHIHHCYQ
201: SGNTNVRSSP THYGFRTKSD GDGISIFGSK DIWIDHCSLS RCKDGLIDAV MGSTGITISN NFFSHHNEVM LLGHSDHYEP DSGMQVTIAF NHFGEKLIQR
301: MPRCRRGYIH VVNNDFTQWE MYAIGGSGNP TINSQGNRYT APTNPFAKEV TKRVETPDGD WKGWNWRSEG DILVNGAFFV ASGEGAEMRY EKAYSVEPKS
401: ASFITQITFH SGVLGVGGRN NNLGMWTTTG SEGTSGLDSY NDYTDEMSGA GSTNRLSFSV LVFLLSSISY LVVFTSSTQM FML

Arabidopsis Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:Q56XU8]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.