Factsheet for Bra028549.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 8
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67560	Canola	plasma membrane	99.18	99.18
Bra006976.1-P	Field mustard	cytosol	85.92	92.12
AT3G53190.1	Thale cress	extracellular	90.2	91.51
KRH67761	Soybean	endoplasmic reticulum, extracellular, vacuole	70.41	73.4
PGSC0003DMT400009869	Potato	cytosol	60.41	69.48
VIT_08s0007g04820.t01	Wine grape	plastid	69.18	69.33
KRH19954	Soybean	endoplasmic reticulum, extracellular, plasma membrane	67.14	68.97
Solyc09g008380.2.1	Tomato	nucleus	66.33	67.29
Bra035852.1-P	Field mustard	extracellular	50.82	60.73
Bra013833.1-P	Field mustard	endoplasmic reticulum, vacuole	49.8	60.1
Bra038614.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	50.61	60.05
Bra010482.1-P	Field mustard	endoplasmic reticulum, extracellular	49.59	59.85
Bra032696.1-P	Field mustard	endoplasmic reticulum, extracellular	50.41	59.81
Bra004073.1-P	Field mustard	extracellular	48.98	58.97
Bra020672.1-P	Field mustard	extracellular	49.8	58.51
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	51.43	58.47
Bra029614.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	48.16	58.27
Bra032494.1-P	Field mustard	extracellular	51.22	58.24
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	50.2	58.16
Bra033980.1-P	Field mustard	extracellular	48.16	58.13
Bra036155.1-P	Field mustard	extracellular	49.39	57.89
Bra004254.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	47.96	57.88
TraesCS1B01G161000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	56.12	57.77
Bra015341.1-P	Field mustard	extracellular	50.82	57.77
TraesCS1D01G142400.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	56.12	57.53
TraesCS1A01G143600.1	Wheat	extracellular	56.33	57.5
KXG38421	Sorghum	extracellular	55.71	56.64
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	56.53	56.42
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	51.63	56.1
Zm00001d032806_P001	Maize	cytosol, plastid	49.39	56.02
GSMUA_Achr4P25120_001	Banana	extracellular	50.61	55.48
Bra025274.1-P	Field mustard	extracellular	46.53	55.34
Bra039081.1-P	Field mustard	extracellular, plastid	46.53	55.34
Bra019209.1-P	Field mustard	endoplasmic reticulum, extracellular	46.94	55.29
Os10t0457200-01	Rice	plasma membrane	55.31	55.19
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	54.9	54.9
HORVU1Hr1G038220.7	Barley	endoplasmic reticulum, extracellular	54.49	54.83
Bra015000.1-P	Field mustard	golgi, plasma membrane	49.18	53.91
Bra033008.1-P	Field mustard	extracellular	43.67	53.77
Bra035588.1-P	Field mustard	extracellular	41.43	52.32
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	55.1	51.53
Bra005799.1-P	Field mustard	extracellular, golgi	53.47	51.17
Bra019729.1-P	Field mustard	extracellular	38.16	50.54
Bra015070.1-P	Field mustard	endoplasmic reticulum, extracellular	50.2	50.0
GSMUA_Achr1P03320_001	Banana	plasma membrane	51.84	49.71
Bra019730.1-P	Field mustard	extracellular	38.98	49.61
Bra013585.1-P	Field mustard	extracellular	38.16	47.58
Bra020859.1-P	Field mustard	extracellular	37.96	47.09
Bra026832.1-P	Field mustard	extracellular	42.65	46.24
Bra016700.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	41.84	44.76
Bra024811.1-P	Field mustard	extracellular	41.63	44.44
Bra017412.1-P	Field mustard	extracellular	41.43	44.23
Bra026221.1-P	Field mustard	endoplasmic reticulum	41.02	43.89
Bra026583.1-P	Field mustard	endoplasmic reticulum, plasma membrane	40.41	43.33
Bra012756.1-P	Field mustard	extracellular	34.29	43.19
Bra006279.1-P	Field mustard	endoplasmic reticulum, extracellular	41.63	42.95
Bra001011.1-P	Field mustard	endoplasmic reticulum, extracellular	41.22	42.89
Bra023504.1-P	Field mustard	extracellular	41.22	42.0
Bra008721.1-P	Field mustard	endoplasmic reticulum, extracellular	42.24	41.48

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	EnsemblPlantsGene:Bra028549	EnsemblPlants:Bra028549.1
EnsemblPlants:Bra028549.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334	UniProt:M4EID4
PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683	PANTHER:PTHR31683:SF21	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126	TMHMM:TMhelix	UniParc:UPI0002543467	SEG:seg

Description

AT3G53190 (E=7e-256) | pectate lyase family protein

Coordinates

chrA02:+:1023914..1027184

Molecular Weight (calculated)

54425.6 Da

IEP (calculated)

6.648

GRAVY (calculated)

-0.241

Length

490 amino acids

Sequence
(BLAST)

001: MMLQRSCIVL FFSLSLFVPY MSLAMLNKTL LLLPHPDPEL VAHDVHRRVN ASLSRRQAMD TTDQTGSNPC FTGNPIDDCW KCDPNWPNNR QGLADCGIGF
101: GQYALGGKGG RFYFVTDSSD DDAVEPKPGT LRYGVIQVEP LWIVFPSNMM IKLKQELIFN SYKTLDGRGA NVHIVGGGCI TLQYVSNVII HNIHIHHCYQ
201: SGNTNVRSSP THYGFRTKSD GDGISIFGSK DIWIDHCSLS RCKDGLIDAV MGSTGITISN NFFSHHNEVM LLGHSDHYEP DSGMQVTIAF NHFGEKLIQR
301: MPRCRRGYIH VVNNDFTQWE MYAIGGSGNP TINSQGNRFT APSNPFAKEV TKRVETPDGE WKGWNWRSEG DILVNGAFFV ASGEGAEMRY EKAYSIEPKS
401: ASFIDQITFH SGVLGVGGRN NNLGMWTTTG SEGNGGLDSY NDYTDEMSGT GSTNRLSFSV IVLAFMLNLL SYLVIFISSP QMFSFQPKCL

Best Arabidopsis Sequence Match ( AT3G53190.1 )
(BLAST)

001: MMLQRSCIVL FFSLFLLVPQ MVFSMLNRTL LLIPHPDPEL VAYQVQWKVN ASITRRQALD TTDQAGSTPC ITGNPIDDCW KCDPNWPNNR QGLADCGIGF
101: GQYALGGKGG QFYFVTDSSD DDAVNPKPGT LRYGVIQEEP LWIVFPSNMM IKLKQELIFN SYKTLDGRGA NVHIVGGGCI TLQYVSNIII HNIHIHHCYQ
201: SGNTNVRSSP THYGFRTKSD GDGISIFGSK DIWIDHCSLS RCKDGLIDAV MGSTGITISN NFFSHHNEVM LLGHSDHYEP DSGMQVTIAF NHFGEKLIQR
301: MPRCRRGYIH VVNNDFTQWE MYAIGGSGNP TINSQGNRYT APTNPFAKEV TKRVETPDGD WKGWNWRSEG DILVNGAFFV ASGEGAEMRY EKAYSVEPKS
401: ASFITQITFH SGVLGVGGRN NNLGMWTTTG SEGTSGLDSY NDYTDEMSGA GSTNRLSFSV LVFLLSSISY LVVFTSSTQM FML

Arabidopsis Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:Q56XU8]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.