Factsheet for Bra020672.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33938	Canola	extracellular	99.76	99.76
Bra036155.1-P	Field mustard	extracellular	95.2	94.98
AT5G48900.1	Thale cress	extracellular	94.96	94.96
Bra029614.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	85.13	87.65
Bra032696.1-P	Field mustard	endoplasmic reticulum, extracellular	77.7	78.45
Bra015341.1-P	Field mustard	extracellular	76.02	73.55
Bra032494.1-P	Field mustard	extracellular	75.78	73.32
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	75.3	72.85
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	73.62	72.58
Bra013833.1-P	Field mustard	endoplasmic reticulum, vacuole	68.82	70.69
Bra010482.1-P	Field mustard	endoplasmic reticulum, extracellular	68.11	69.95
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	75.06	69.4
Bra033980.1-P	Field mustard	extracellular	67.39	69.21
Bra004254.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	66.91	68.72
Bra004073.1-P	Field mustard	extracellular	66.91	68.55
Bra035852.1-P	Field mustard	extracellular	66.67	67.8
Bra038614.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	66.91	67.55
Bra015070.1-P	Field mustard	endoplasmic reticulum, extracellular	78.42	66.46
Bra015000.1-P	Field mustard	golgi, plasma membrane	68.82	64.21
Bra019209.1-P	Field mustard	endoplasmic reticulum, extracellular	63.79	63.94
Bra025274.1-P	Field mustard	extracellular	63.07	63.84
Bra039081.1-P	Field mustard	extracellular, plastid	62.35	63.11
Bra033008.1-P	Field mustard	extracellular	59.47	62.31
Bra019730.1-P	Field mustard	extracellular	51.08	55.32
Bra019729.1-P	Field mustard	extracellular	48.44	54.59
Bra035588.1-P	Field mustard	extracellular	50.6	54.38
Bra006976.1-P	Field mustard	cytosol	58.03	52.95
Bra013585.1-P	Field mustard	extracellular	49.4	52.42
Bra020859.1-P	Field mustard	extracellular	48.44	51.14
Bra028549.1-P	Field mustard	plasma membrane	58.51	49.8
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	57.55	48.88
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	57.07	48.57
Bra006279.1-P	Field mustard	endoplasmic reticulum, extracellular	55.16	48.42
Bra023504.1-P	Field mustard	extracellular	54.68	47.4
Bra001011.1-P	Field mustard	endoplasmic reticulum, extracellular	53.0	46.92
Bra012756.1-P	Field mustard	extracellular	43.65	46.79
Bra026832.1-P	Field mustard	extracellular	50.6	46.68
Bra008721.1-P	Field mustard	endoplasmic reticulum, extracellular	54.44	45.49
Bra017412.1-P	Field mustard	extracellular	49.88	45.32
Bra016700.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	49.64	45.2
Bra005799.1-P	Field mustard	extracellular, golgi	55.4	45.12
Bra026221.1-P	Field mustard	endoplasmic reticulum	49.4	44.98
Bra024811.1-P	Field mustard	extracellular	49.16	44.66
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	55.4	44.08
Bra026583.1-P	Field mustard	endoplasmic reticulum, plasma membrane	48.2	43.98

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	EnsemblPlantsGene:Bra020672	EnsemblPlants:Bra020672.1
EnsemblPlants:Bra020672.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490
GO:GO:0046872	InterPro:IPR012334	UniProt:M4DVX8	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF34	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126
SignalP:SignalP-noTM	UniParc:UPI00025464FA	SEG:seg	:	:	:

Description

AT5G48900 (E=5e-221) | pectate lyase family protein

Coordinates

chrA02:+:23821451..23825041

Molecular Weight (calculated)

46616.5 Da

IEP (calculated)

9.333

GRAVY (calculated)

-0.292

Length

417 amino acids

Sequence
(BLAST)

001: MATTQVLVLF ASALLLTMLF AGVDSTRSNE TWHEHAVENP DEVAAMVDMS IRNSTMRRRL GYFSCSTGNP IDDCWRCDRK WQLRRKHLAV CAIGFGRNAI
101: GGRDGRYYVV SDPNDDNPVN PKPGTLRHAV IQVEPLWIVF KRDMVITLKQ ELIMNSFKTI DGRGVNVHIA NGACITIQYV TNIIIHGIHI HDCKPTGNAM
201: VRSSPSHYGW RTMADGDGIS IFGSSHIWID HNSLSSCADG LIDAVMASTA ITISNNYFTH HNEVMLLGHS DTYTRDKVMQ VTIAYNHFGR GLIQRMPRCR
301: HGYFHVVNND YTHWEMYAIG GSASPTINSQ GNRYLAPRNR FAKEVTKRDY AGHWQWKHWN WRSEGDLFLN GAFFTRSGSG RGASYARASS LAAKSSSLVG
401: VITSNAGALN CRGGRRC

Best Arabidopsis Sequence Match ( AT5G48900.1 )
(BLAST)

001: MAVTQILVVF ASALLLSMFF TGVDSTRSNE TWHEHAVENP EEVAAMVDMS IRNSTARRRL GYFSCSTGNP IDDCWRCDRR WQSRRKHLAN CAIGFGRNAI
101: GGRDGRYYVV SDPNDDNPVN PKPGTLRHAV IQEEPLWIVF KRDMVITLKE ELIMNSFKTI DGRGVNVHIA NGACITIQFV TNIIIHGIHI HDCRPTGNAM
201: VRSSPSHYGW RTMADGDGIS IFGSSHIWID HNSLSNCADG LIDAVMASTA ITISNNYFTH HNEVMLLGHS DTYTRDKVMQ VTIAYNHFGE GLIQRMPRCR
301: HGYFHVVNND YTHWEMYAIG GSASPTINSQ GNRYLAPRNR FAKEVTKRDY AGQWQWRHWN WRSEGDLFLN GAFFTRSGSG LGASYARASS LAAKSSSLVG
401: VITYNAGALN CRGGRRC

Arabidopsis Description

Probable pectate lyase 20 [Source:UniProtKB/Swiss-Prot;Acc:Q93WF1]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.