Factsheet for Bra035588.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 7
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20748	Canola	extracellular	99.23	99.23
CDY06557	Canola	extracellular	98.45	98.71
AT5G55720.1	Thale cress	endoplasmic reticulum, extracellular	85.57	84.69
VIT_19s0015g00510.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	62.89	60.7
Bra035852.1-P	Field mustard	extracellular	57.22	54.15
Bra010482.1-P	Field mustard	endoplasmic reticulum, extracellular	56.44	53.94
Bra013833.1-P	Field mustard	endoplasmic reticulum, vacuole	56.44	53.94
Bra033980.1-P	Field mustard	extracellular	55.67	53.2
Bra038614.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	56.44	53.03
Bra004073.1-P	Field mustard	extracellular	55.15	52.58
Bra004254.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	53.87	51.48
Bra036155.1-P	Field mustard	extracellular	55.41	51.44
Bra032696.1-P	Field mustard	endoplasmic reticulum, extracellular	54.64	51.33
Bra039081.1-P	Field mustard	extracellular, plastid	54.12	50.97
Bra020672.1-P	Field mustard	extracellular	54.38	50.6
Bra029614.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	52.58	50.37
Bra025274.1-P	Field mustard	extracellular	53.35	50.24
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	54.38	48.96
Bra019209.1-P	Field mustard	endoplasmic reticulum, extracellular	52.32	48.8
Bra033008.1-P	Field mustard	extracellular	49.74	48.49
Bra015341.1-P	Field mustard	extracellular	53.35	48.03
Bra032494.1-P	Field mustard	extracellular	53.35	48.03
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	52.32	47.99
Bra019729.1-P	Field mustard	extracellular	45.62	47.84
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	55.41	47.67
Bra019730.1-P	Field mustard	extracellular	46.13	46.49
Bra013585.1-P	Field mustard	extracellular	46.65	46.06
Bra012756.1-P	Field mustard	extracellular	45.88	45.76
Bra020859.1-P	Field mustard	extracellular	46.39	45.57
Bra015000.1-P	Field mustard	golgi, plasma membrane	51.29	44.52
Bra006976.1-P	Field mustard	cytosol	52.06	44.2
Bra015070.1-P	Field mustard	endoplasmic reticulum, extracellular	54.38	42.89
Bra028549.1-P	Field mustard	plasma membrane	52.32	41.43
Bra016700.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	48.71	41.27
Bra026832.1-P	Field mustard	extracellular	47.68	40.93
Bra026221.1-P	Field mustard	endoplasmic reticulum	47.68	40.39
Bra024811.1-P	Field mustard	extracellular	46.91	39.65
Bra017412.1-P	Field mustard	extracellular	46.91	39.65
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	50.0	39.51
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	49.48	39.18
Bra005799.1-P	Field mustard	extracellular, golgi	51.03	38.67
Bra026583.1-P	Field mustard	endoplasmic reticulum, plasma membrane	45.1	38.29
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	50.77	37.6
Bra001011.1-P	Field mustard	endoplasmic reticulum, extracellular	44.33	36.52
Bra006279.1-P	Field mustard	endoplasmic reticulum, extracellular	43.81	35.79
Bra023504.1-P	Field mustard	extracellular	43.56	35.14
Bra008721.1-P	Field mustard	endoplasmic reticulum, extracellular	44.33	34.47

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	EnsemblPlantsGene:Bra035588	EnsemblPlants:Bra035588.1
EnsemblPlants:Bra035588.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490
GO:GO:0046872	InterPro:IPR012334	UniProt:M4F3D8	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF33	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126
SignalP:SignalP-noTM	UniParc:UPI0002546476	SEG:seg	:	:	:

Description

AT5G55720 (E=9e-198) | pectate lyase family protein

Coordinates

chrA02:-:7405096..7406535

Molecular Weight (calculated)

42980.3 Da

IEP (calculated)

4.897

GRAVY (calculated)

-0.301

Length

388 amino acids

Sequence
(BLAST)

001: MSIVCTIFLF LLTASTAFAS AFPKPAPVTH WSTSETSNAT TASCSATGNP IDDCWRCDKK WKSNRKSLAD CAVGFGRDSV GGRAGEFYTV TDSGDEDPLN
101: PSPGTLRYAA TQDQPLWIIF DRDMVITLKE DIQVTSYKTI DGRGNNVQIA YGPCLALYQV SNVIIHNIYI HHCVPAKRSL GGYSDGDGIS IFESRDVWID
201: HCTLEKCHDG LIDAVGGSTD ITISNNYMLN HNEVMLLGHS DEFVGDRDMR VSIAFNYFGE GLVQRMPRCR HGFFHIVNNI YREWEMYAIG GSANPTIFSQ
301: GNVFIASDNQ FTKEVTKRES VDGDDEWKEW NWKSEGDEML NGAFFTPSGN EDSPSYTKMS SMVARPASLL KTTHPSVGVL SCQIDQPC

Best Arabidopsis Sequence Match ( AT5G55720.1 )
(BLAST)

001: MSIVCTFFLF LLNTSFAFAF AIPKPPIVRR LSTTVTSNST ASSCSANGNP IDECWRCDEN WKDNRKNLAD CAVGFGRDSI GGRAGEFYTV TDSGDDNPLN
101: PTPGTLRYAA TQDQPLWIIF DRDMVIQLKQ DLQVASYKTI DGRGNNVQIA YGPCLTLYKV SNIIINNLYI HDCVPVKRNA LSSLGGYSDG DGISIFESRD
201: IWIDHCTLEK CYDGLIDAVN GSTDITISNS YMLNHNEVML LGHSDEYSGD RDMRVTIAFN YFGEGLVQRM PRCRHGYFHI VNNIYRDWKM YAIGGSANPT
301: IFSQGNVFIA SNNQFTKEVT KRESADGDEE WKEWNWKSEG DEMVNGAFFT PSGKEDSPSY AKFSSMVARP ASLLKTTHPS VGVLSCEIDQ AC

Arabidopsis Description

Putative pectate lyase 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9FM66]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.