Factsheet for Bra038614.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 6
plasma membrane 7
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41506	Canola	endoplasmic reticulum, extracellular, vacuole	99.27	99.27
Bra035852.1-P	Field mustard	extracellular	93.7	94.39
AT5G63180.1	Thale cress	plastid	92.49	88.43
VIT_17s0000g09810.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	80.39	82.38
Bra010482.1-P	Field mustard	endoplasmic reticulum, extracellular	80.63	82.02
VIT_01s0137g00240.t01	Wine grape	extracellular	79.42	81.39
Bra013833.1-P	Field mustard	endoplasmic reticulum, vacuole	79.9	81.28
Solyc05g014000.2.1	Tomato	extracellular, nucleus	78.45	80.8
PGSC0003DMT400027955	Potato	extracellular	78.45	80.8
GSMUA_Achr6P28260_001	Banana	endoplasmic reticulum, extracellular	78.21	79.36
Bra004073.1-P	Field mustard	extracellular	75.54	76.66
Bra033980.1-P	Field mustard	extracellular	75.06	76.35
Bra004254.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	74.82	76.11
Bra019209.1-P	Field mustard	endoplasmic reticulum, extracellular	74.58	74.04
Bra039081.1-P	Field mustard	extracellular, plastid	70.7	70.87
Bra025274.1-P	Field mustard	extracellular	70.46	70.63
Bra032696.1-P	Field mustard	endoplasmic reticulum, extracellular	69.25	69.25
Bra033008.1-P	Field mustard	extracellular	66.1	68.59
Bra036155.1-P	Field mustard	extracellular	68.52	67.7
Bra029614.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	65.62	66.91
Bra020672.1-P	Field mustard	extracellular	67.55	66.91
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	65.86	64.3
Bra015341.1-P	Field mustard	extracellular	66.34	63.57
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	66.1	63.34
Bra032494.1-P	Field mustard	extracellular	65.62	62.88
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	67.07	61.42
Bra015000.1-P	Field mustard	golgi, plasma membrane	62.23	57.49
Bra015070.1-P	Field mustard	endoplasmic reticulum, extracellular	67.55	56.71
Bra035588.1-P	Field mustard	extracellular	53.03	56.44
Bra019729.1-P	Field mustard	extracellular	48.18	53.78
Bra006976.1-P	Field mustard	cytosol	58.6	52.95
Bra019730.1-P	Field mustard	extracellular	48.67	52.21
Bra013585.1-P	Field mustard	extracellular	48.91	51.4
Bra020859.1-P	Field mustard	extracellular	48.67	50.89
Bra028549.1-P	Field mustard	plasma membrane	60.05	50.61
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	57.14	48.16
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	56.9	47.86
Bra012756.1-P	Field mustard	extracellular	43.83	46.53
Bra006279.1-P	Field mustard	endoplasmic reticulum, extracellular	53.51	46.53
Bra001011.1-P	Field mustard	endoplasmic reticulum, extracellular	52.78	46.28
Bra005799.1-P	Field mustard	extracellular, golgi	57.14	46.09
Bra026832.1-P	Field mustard	extracellular	50.36	46.02
Bra017412.1-P	Field mustard	extracellular	50.85	45.75
Bra016700.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	50.12	45.2
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	57.14	45.04
Bra023504.1-P	Field mustard	extracellular	52.3	44.91
Bra026583.1-P	Field mustard	endoplasmic reticulum, plasma membrane	49.15	44.42
Bra026221.1-P	Field mustard	endoplasmic reticulum	49.15	44.32
Bra024811.1-P	Field mustard	extracellular	49.15	44.23
Bra008721.1-P	Field mustard	endoplasmic reticulum, extracellular	53.27	44.09

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	EnsemblPlantsGene:Bra038614	EnsemblPlants:Bra038614.1
EnsemblPlants:Bra038614.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490
GO:GO:0046872	InterPro:IPR012334	UniProt:M4FBZ8	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF28	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000253F24A	SEG:seg	:	:

Description

AT5G63180 (E=4e-226) | pectate lyase family protein

Coordinates

chrA06:-:14192663..14194623

Molecular Weight (calculated)

45824.7 Da

IEP (calculated)

6.410

GRAVY (calculated)

-0.384

Length

413 amino acids

Sequence
(BLAST)

001: MNTMLNSSHA SFALIFLYCI FFFALALSSP VSDPELIVEE VHRKINESIS RRNLGYFSCE TGNPIDDCWR CDKDWEKNRK RLADCGIGFG KNAIGGRDGE
101: IYVVTDPGND DPVNPKPGTL RYAVIQDEPL WIIFSRDMTI QLKEELIMNS FKTLDGRGAS VHISGGPCIT IQYVTNIIIH GLHIHDCKQG GNTDVRDSPE
201: HYGWRTISDG DGVSIFGGSH VWVDHCSLSN CNDGLIDAIR GSTAITISNN YLTHHNKVML LGHSDTYEQD KNMQVTIAFN HFGEGLVQRM PRCRHGYFHV
301: VNNDYTHWEM YAIGGSANPT INSQGNRFLA PDNSFSKEVT KHEDAPESEW SRWNWRSEGD LMLNGAFFTL SGAGPTKSSS YSRASSLAAR PSSNVGEITI
401: SSGALSCKKG SHC

Best Arabidopsis Sequence Match ( AT5G63180.1 )
(BLAST)

001: MFRPNSLLIP SNLSTTKSQR NTMLNSSYLS FALIFFCCIL FSALASSLPV SDPELVVEEV HRKINESISR RKLGFFSCGS GNPIDDCWRC DKDWEKNRKR
101: LADCGIGFGK NAIGGRDGEI YVVTDPGNDD PVNPRPGTLR YAVIQDEPLW IIFKRDMTIQ LKEELIMNSF KTLDGRGASV HISGGPCITI QYVTNIIIHG
201: LHIHDCKQGG NTYVRDSPEH YGYRTVSDGD GVSIFGGSHV WVDHCSLSNC NDGLIDAIRG STAITISNNY LTHHNKVMLL GHSDTYEQDK NMQVTIAFNH
301: FGEGLVQRMP RCRHGYFHVV NNDYTHWEMY AIGGSANPTI NSQGNRFLAP DDSSSKEVTK HEDAPEDEWR NWNWRSEGDL LLNGAFFTYS GAGPAKSSSY
401: SKASSLAARP SSHVGEITIA SGALSCKRGS HC

Arabidopsis Description

Probable pectate lyase 22 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z25]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.