Factsheet for Bra032696.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 5
plasma membrane 6
golgi 5
nucleus 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01119	Canola	endoplasmic reticulum, extracellular	100.0	94.94
AT4G13210.2	Thale cress	endoplasmic reticulum, extracellular	92.74	87.44
Bra020672.1-P	Field mustard	extracellular	78.45	77.7
Bra029614.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	76.03	77.53
Bra036155.1-P	Field mustard	extracellular	78.45	77.51
Bra032494.1-P	Field mustard	extracellular	74.82	71.69
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	74.58	71.46
Bra015341.1-P	Field mustard	extracellular	74.09	71.0
Bra013833.1-P	Field mustard	endoplasmic reticulum, vacuole	69.49	70.69
Bra010482.1-P	Field mustard	endoplasmic reticulum, extracellular	69.25	70.44
Bra015070.1-P	Field mustard	endoplasmic reticulum, extracellular	82.57	69.31
Bra038614.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	69.25	69.25
Bra033980.1-P	Field mustard	extracellular	68.04	69.21
Bra004073.1-P	Field mustard	extracellular	67.8	68.8
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	70.46	68.79
Bra035852.1-P	Field mustard	extracellular	68.04	68.54
Bra004254.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	66.83	67.98
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	73.37	67.18
Bra019209.1-P	Field mustard	endoplasmic reticulum, extracellular	65.62	65.14
Bra025274.1-P	Field mustard	extracellular	63.68	63.84
Bra039081.1-P	Field mustard	extracellular, plastid	62.47	62.62
Bra015000.1-P	Field mustard	golgi, plasma membrane	67.55	62.42
Bra033008.1-P	Field mustard	extracellular	59.56	61.81
Bra035588.1-P	Field mustard	extracellular	51.33	54.64
Bra019730.1-P	Field mustard	extracellular	49.39	52.99
Bra006976.1-P	Field mustard	cytosol	58.11	52.52
Bra019729.1-P	Field mustard	extracellular	46.0	51.35
Bra028549.1-P	Field mustard	plasma membrane	59.81	50.41
Bra013585.1-P	Field mustard	extracellular	47.94	50.38
Bra020859.1-P	Field mustard	extracellular	47.46	49.62
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	57.14	48.16
Bra006279.1-P	Field mustard	endoplasmic reticulum, extracellular	54.72	47.58
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	56.17	47.25
Bra024811.1-P	Field mustard	extracellular	52.06	46.84
Bra001011.1-P	Field mustard	endoplasmic reticulum, extracellular	53.27	46.71
Bra017412.1-P	Field mustard	extracellular	51.82	46.62
Bra023504.1-P	Field mustard	extracellular	53.51	45.95
Bra026832.1-P	Field mustard	extracellular	50.12	45.8
Bra012756.1-P	Field mustard	extracellular	43.1	45.76
Bra016700.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	50.36	45.41
Bra005799.1-P	Field mustard	extracellular, golgi	56.17	45.31
Bra026583.1-P	Field mustard	endoplasmic reticulum, plasma membrane	49.64	44.86
Bra026221.1-P	Field mustard	endoplasmic reticulum	49.64	44.76
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	56.66	44.66
Bra008721.1-P	Field mustard	endoplasmic reticulum, extracellular	53.75	44.49

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	EnsemblPlantsGene:Bra032696	EnsemblPlants:Bra032696.1
EnsemblPlants:Bra032696.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490
GO:GO:0046872	InterPro:IPR012334	UniProt:M4EV63	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF34	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002543FF6	SEG:seg	:	:

Description

AT4G13210 (E=1e-213) | lyase/ pectate lyase

Coordinates

chrA04:-:5407919..5417887

Molecular Weight (calculated)

45791.7 Da

IEP (calculated)

9.191

GRAVY (calculated)

-0.262

Length

413 amino acids

Sequence
(BLAST)

001: MVIARTLSSV SATLIIILTL LVHVNGEWHE HAVKDPEEIA AMVDMKIRNS TERRRLGYFS CSTGNPIDDC WRCDKKWHRQ RKRLASCAIG FGRNAVGGRD
101: GRFYVVTDPS DHDPVKPKPG TLRYAVIQDR PLWIVFKRDM VITLSQELIM NSFKTIDGRG VNVHIAGGAC ITIQYVTNII IHGVNIHDCK RTGNAMVRSS
201: ETHYGWRTMA DGDGISIFGS SHIWIDHNSM SNCADGLIDA IMGSTAITIS NNYLTHHNEA ILLGHTDSYT RDKMMQVTIA YNHFGEGLIQ RMPRCRHGYF
301: HVVNNDYTHW EMYAIGGSAN PTINSQGNRF LAPGNRFAKE VTKRVGAGKG EWNQWNWRSQ GDLLLNGAYF TSSGAGASSS YARASSLAAK SSSLVGMLTY
401: SSGALKCRIG TPC

Best Arabidopsis Sequence Match ( AT4G13210.2 )
(BLAST)

001: MVVARTLFSI SATLIIFLAL FLHVNAVQET REPKHESSRN TSTVDNLSDG EWHEHAVKDP EEIAAMVDMS IRNSTYRRKL GFFSSCSTGN PIDDCWRCDK
101: KWHRRRKRLA DCAIGFGRNA VGGRDGRYYI VTDPSDHDPV TPKPGTLRYA VIQDEPLWIV FKRDMVITLS QELIMNSFKT IDGRGVNVHI AGGACLTVQY
201: VTNIIIHGIN IHDCKRTGNA MVRSSESHYG WRTMADGDGI SIFGSSHIWI DHNSLSSCAD GLIDAIMGST AITISNNYLT HHNEAILLGH TDSYTRDKMM
301: QVTIAYNHFG EGLIQRMPRC RHGYFHVVNN DYTHWEMYAI GGSANPTINS QGNRFLAPGN RFAKEVTKRV GAGKGEWNNW NWRSQGDLML NGAYFTSSGA
401: GASANYARAS SLAAKSSSLV GMLTSSSGAL KCRIGTLC

Arabidopsis Description

Putative pectate lyase 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVQ6]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.