Factsheet for Bra032730.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 6
plasma membrane 6
golgi 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01151	Canola	endoplasmic reticulum, extracellular, vacuole	99.33	99.11
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	85.59	91.25
AT4G13710.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	89.14	85.53
HORVU2Hr1G002930.1	Barley	cytosol	50.55	83.21
VIT_05s0051g00590.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	76.72	80.47
GSMUA_Achr11P...	Banana	cytosol, extracellular, vacuole	63.19	79.17
GSMUA_Achr8P12860_001	Banana	cytosol	61.2	78.19
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	74.06	77.49
KRG90246	Soybean	nucleus	76.5	77.01
GSMUA_Achr5P15620_001	Banana	cytosol	59.87	76.92
KRH33474	Soybean	nucleus	76.27	76.44
Bra015341.1-P	Field mustard	extracellular	72.95	76.33
Bra032494.1-P	Field mustard	extracellular	72.51	75.87
GSMUA_Achr4P26690_001	Banana	extracellular	61.42	75.48
GSMUA_Achr11P...	Banana	extracellular	60.75	75.27
Bra029614.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	67.41	75.06
Bra020672.1-P	Field mustard	extracellular	69.4	75.06
Bra015000.1-P	Field mustard	golgi, plasma membrane	74.06	74.72
Bra036155.1-P	Field mustard	extracellular	69.18	74.64
Solyc09g091430.2.1	Tomato	nucleus	74.5	74.5
PGSC0003DMT400076251	Potato	extracellular	73.84	74.33
Bra032696.1-P	Field mustard	endoplasmic reticulum, extracellular	67.18	73.37
GSMUA_Achr7P04580_001	Banana	endoplasmic reticulum, extracellular	72.06	72.71
GSMUA_Achr3P00290_001	Banana	endoplasmic reticulum, extracellular, vacuole	65.85	72.26
Zm00001d025067_P001	Maize	mitochondrion	71.18	70.7
Zm00001d004448_P001	Maize	endoplasmic reticulum	69.84	70.31
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, golgi	70.73	70.26
Bra013833.1-P	Field mustard	endoplasmic reticulum, vacuole	62.53	69.46
Bra004073.1-P	Field mustard	extracellular	62.31	69.04
Bra004254.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	62.08	68.97
Bra033980.1-P	Field mustard	extracellular	62.08	68.97
Bra010482.1-P	Field mustard	endoplasmic reticulum, extracellular	60.98	67.73
TraesCS2D01G018000.1	Wheat	golgi	70.95	67.65
Bra035852.1-P	Field mustard	extracellular	61.2	67.32
KXG25802	Sorghum	plastid	72.06	67.15
Bra038614.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	61.42	67.07
TraesCS2B01G024500.2	Wheat	golgi	71.18	66.74
TraesCS2A01G016500.1	Wheat	golgi	70.95	66.53
Bra015070.1-P	Field mustard	endoplasmic reticulum, extracellular	70.73	64.84
Bra039081.1-P	Field mustard	extracellular, plastid	58.54	64.08
Bra025274.1-P	Field mustard	extracellular	58.31	63.84
Bra019209.1-P	Field mustard	endoplasmic reticulum, extracellular	57.65	62.5
Bra033008.1-P	Field mustard	extracellular	54.99	62.31
HORVU2Hr1G002880.2	Barley	mitochondrion	70.07	61.96
Bra035588.1-P	Field mustard	extracellular	47.67	55.41
Bra006976.1-P	Field mustard	cytosol	55.65	54.92
Bra019729.1-P	Field mustard	extracellular	44.12	53.78
Bra019730.1-P	Field mustard	extracellular	45.68	53.51
Bra028549.1-P	Field mustard	plasma membrane	56.1	51.63
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	54.32	49.9
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	54.1	49.8
Bra020859.1-P	Field mustard	extracellular	43.24	49.37
Bra013585.1-P	Field mustard	extracellular	42.79	49.11
Bra006279.1-P	Field mustard	endoplasmic reticulum, extracellular	51.0	48.42
Bra026832.1-P	Field mustard	extracellular	47.67	47.57
Bra017412.1-P	Field mustard	extracellular	48.12	47.28
Bra024811.1-P	Field mustard	extracellular	47.89	47.06
Bra016700.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	47.67	46.94
Bra026221.1-P	Field mustard	endoplasmic reticulum	47.45	46.72
Bra023504.1-P	Field mustard	extracellular	49.67	46.57
Bra005799.1-P	Field mustard	extracellular, golgi	52.55	46.29
Bra001011.1-P	Field mustard	endoplasmic reticulum, extracellular	48.12	46.07
Bra012756.1-P	Field mustard	extracellular	39.69	46.02
Bra008721.1-P	Field mustard	endoplasmic reticulum, extracellular	50.33	45.49
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	52.77	45.42
Bra026583.1-P	Field mustard	endoplasmic reticulum, plasma membrane	45.45	44.86

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	EnsemblPlantsGene:Bra032730	EnsemblPlants:Bra032730.1
EnsemblPlants:Bra032730.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490
GO:GO:0046872	InterPro:IPR012334	UniProt:M4EV97	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF63	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126
TMHMM:TMhelix	UniParc:UPI0002543DF2	SEG:seg	:	:	:

Description

AT4G13710 (E=8e-230) | pectate lyase family protein

Coordinates

chrA04:-:5133444..5136575

Molecular Weight (calculated)

49795.0 Da

IEP (calculated)

7.797

GRAVY (calculated)

-0.327

Length

451 amino acids

Sequence
(BLAST)

001: MASSSQKVTS VCLTVLVLLA LSATILRKIE IPSSRKVKTE ELQSSKNTST MAANRLEGVE LNEQHAVDDP DKVADEVSTL VQMSEHNITA RRKLGFFSCG
101: TGNPIDDCWR CDRNWHKNRK RLADCGIGFG RNAVGGRDGR FYVVTDPTDE DVINPKPGTL RHAVIQDEPL WIVFKRDMVI ELKQELIMNS FKTIDGRGAN
201: VHIANGACIT LQFITNVIIH GVHIHDCKPT GNAMVRSSPS HFGWRTMADG DAVSIFQSSH IWIDHNSLSH CADGLVDAVM GSTAITVSNN HFTHHNEVML
301: LGHSDSYTID KLMQVTIAYN HFGEGLVQRM PRCRHGYFHV VNNDYTHWEM YAIGGSADPT INSQGNRYAA PKNPFAKEVT KRVETDASEW QKWNWRSEGD
401: LLLNGAFFKA SGAEASASYG RASSLAAKPS SMVHTITSTA GALGCRRGRP C

Best Arabidopsis Sequence Match ( AT4G13710.2 )
(BLAST)

001: MASSSQKLIS VCVAVLVVLA LTAMIFRNSE ISLSRKLKTE EFQSLNSSTM AATRLDGEPQ QQQHAVADDP DMVADEVAKL VQMSEQNRTA RRKLGFFSCG
101: TGNPIDDCWR CDRNWHKNRK RLADCGIGFG RNAIGGRDGR FYIVTDPTDE DVVNPKPGTL RHAVIQEEPL WIVFKRDMVI ELKQELIMNS FKTIDARGSN
201: VHIANGACIT IQFITNVIIH GLHIHDCKPT GNAMVRSSPS HFGWRTMADG DAVSIFGSSH IWIDHNSLSH CADGLVDAVM GSTAITVSNN HFTHHNEVML
301: LGHSDSYTKD KLMQVTIAYN HFGEGLVQRM PRCRHGYFHV VNNDYTHWEM YAIGGSAEPT INSQGNRYAA PMDRFAKEVT KRVETDASEW KKWNWRSEGD
401: LLLNGAFFRP SGAGASASYG RASSLAAKPS SMVDTITSTA GALGCRKGRP C

Arabidopsis Description

Probable pectate lyase 15 [Source:UniProtKB/Swiss-Prot;Acc:Q944R1]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.