Factsheet for Zm00001d025067_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G002930.1	Barley	cytosol	56.39	93.43
KXG25802	Sorghum	plastid	95.59	89.67
Zm00001d004448_P001	Maize	endoplasmic reticulum	87.67	88.84
TraesCS2D01G018000.1	Wheat	golgi	84.58	81.18
TraesCS2A01G016500.1	Wheat	golgi	85.68	80.87
TraesCS2B01G024500.2	Wheat	golgi	84.8	80.04
GSMUA_Achr3P00290_001	Banana	endoplasmic reticulum, extracellular, vacuole	70.26	77.62
VIT_05s0051g00590.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	72.91	76.98
GSMUA_Achr7P04580_001	Banana	endoplasmic reticulum, extracellular	75.55	76.73
HORVU2Hr1G002880.2	Barley	mitochondrion	84.14	74.9
KRH33474	Soybean	nucleus	73.79	74.44
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	69.16	74.23
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, golgi	74.23	74.23
KRG90246	Soybean	nucleus	73.13	74.11
AT1G04680.1	Thale cress	extracellular	68.94	72.62
CDY61137	Canola	extracellular	68.28	71.93
CDX89799	Canola	extracellular	68.06	71.69
CDY15517	Canola	endoplasmic reticulum, extracellular, golgi	67.84	71.46
Bra032494.1-P	Field mustard	extracellular	67.84	71.46
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	67.84	71.46
Bra015341.1-P	Field mustard	extracellular	67.84	71.46
PGSC0003DMT400076251	Potato	extracellular	70.48	71.43
CDY53564	Canola	endoplasmic reticulum, extracellular, vacuole	71.37	71.21
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	70.7	71.18
Solyc09g091430.2.1	Tomato	nucleus	70.7	71.18
CDX86615	Canola	endoplasmic reticulum, extracellular, golgi	67.4	71.0
CDY01151	Canola	endoplasmic reticulum, extracellular, vacuole	70.48	70.8
AT4G13710.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	71.59	69.15
CDY18738	Canola	endoplasmic reticulum, extracellular	70.93	67.65
Bra015000.1-P	Field mustard	golgi, plasma membrane	64.1	65.1
AT3G24230.1	Thale cress	endoplasmic reticulum, golgi, vacuole	64.32	64.6
CDY66697	Canola	endoplasmic reticulum, golgi	63.44	64.43
CDX77470	Canola	golgi, plasma membrane	64.32	63.62
Zm00001d032806_P001	Maize	cytosol, plastid	51.54	54.17
Zm00001d000216_P001	Maize	golgi, vacuole	50.0	51.83
Zm00001d036158_P001	Maize	endoplasmic reticulum, extracellular, vacuole	49.78	49.89
Zm00001d046389_P007	Maize	endoplasmic reticulum, extracellular	47.58	49.88
Zm00001d036945_P001	Maize	endoplasmic reticulum	41.85	45.24

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	UniProt:A0A1D6J4K9	ProteinID:AQK42893.1	InterPro:AmbAllergen
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872
InterPro:IPR012334	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683	PANTHER:PTHR31683:SF34	InterPro:Pec_lyase
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126	UniParc:UPI0008431110	EnsemblPlantsGene:Zm00001d025067
EnsemblPlants:Zm00001d025067_P001	EnsemblPlants:Zm00001d025067_T001	SEG:seg	:	:	:

Description

Probable pectate lyase 8

Coordinates

chr10:-:102424604..102432758

Molecular Weight (calculated)

48948.8 Da

IEP (calculated)

8.357

GRAVY (calculated)

-0.253

Length

454 amino acids

Sequence
(BLAST)

001: MAAAGSSAAR ARRAGLVVAV SAALPGGRVR VLDGLRQRST SVVAGGARRW LRDSSLPAAT TRGRADGDAG AGAVEDPEAV ANDVHASINN ITARRNLGYL
101: SCGTGNPIDD CWRCDSDWHN NRKRLADCGI GFGRNAIGGR DGKIYVVTDP SDDDPVNPRK GTLRYAVIQE EPLWIIFKRD MVITLKEELI MNSFKTIDGR
201: GANVHIANGA CITIQYITNV IIHGLHIHDC KPTGNAMVRS SPSHYGWRTM ADGDGVSIFG SSHVWVDHCS LSNCADGLID AIMGSTAITV SNNYFTHHNE
301: VMLLGHSDSY VKDKAMQVTI AFNHFGEGLI QRMPRCRHGY FHVVNNDYTH WEMYAIGGSA EPTINSQGNR YLAPTNPFAK EVTKRVETAH TVWKRWNWRS
401: EGDLLLNGAY FTPSGAGASA SYSRASSLGA KSSSMVGTIT LDAGALSCHK GAAC

Best Arabidopsis Sequence Match ( AT4G13710.1 )
(BLAST)

001: MASSSQKLIS VCVAVLVVLA LTAMIFRNSE ISLSRKLKTE VIQSSNSSTM AAIRKLKTEE FQSLNSSTMA ATRLDGEPQQ QQHAVADDPD MVADEVAKLV
101: QMSEQNRTAR RKLGFFSCGT GNPIDDCWRC DRNWHKNRKR LADCGIGFGR NAIGGRDGRF YIVTDPTDED VVNPKPGTLR HAVIQEEPLW IVFKRDMVIE
201: LKQELIMNSF KTIDARGSNV HIANGACITI QFITNVIIHG LHIHDCKPTG NAMVRSSPSH FGWRTMADGD AVSIFGSSHI WIDHNSLSHC ADGLVDAVMG
301: STAITVSNNH FTHHNEVMLL GHSDSYTKDK LMQVTIAYNH FGEGLVQRMP RCRHGYFHVV NNDYTHWEMY AIGGSAEPTI NSQGNRYAAP MDRFAKEVTK
401: RVETDASEWK KWNWRSEGDL LLNGAFFRPS GAGASASYGR ASSLAAKPSS MVDTITSTAG ALGCRKGRPC

Arabidopsis Description

Probable pectate lyase 15 [Source:UniProtKB/Swiss-Prot;Acc:Q944R1]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.