Factsheet for VIT_05s0051g00590.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 7
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, golgi
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, golgi, mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G002930.1	Barley	cytosol	54.88	86.13
GSMUA_Achr8P12860_001	Banana	cytosol	69.53	84.7
GSMUA_Achr11P...	Banana	cytosol, extracellular, vacuole	70.23	83.89
VIT_07s0005g05520.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	86.05	83.15
KRG90246	Soybean	nucleus	86.05	82.59
KRH33474	Soybean	nucleus	85.58	81.78
PGSC0003DMT400076251	Potato	extracellular	84.42	81.03
GSMUA_Achr5P15620_001	Banana	cytosol	65.81	80.63
AT1G04680.1	Thale cress	extracellular	80.7	80.51
GSMUA_Achr11P...	Banana	extracellular	68.14	80.49
Solyc09g091430.2.1	Tomato	nucleus	84.42	80.49
GSMUA_Achr4P26690_001	Banana	extracellular	68.37	80.11
CDX89799	Canola	extracellular	79.3	79.12
CDY15517	Canola	endoplasmic reticulum, extracellular, golgi	79.3	79.12
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	79.3	79.12
CDX86615	Canola	endoplasmic reticulum, extracellular, golgi	79.07	78.89
CDY61137	Canola	extracellular	78.84	78.65
Bra015341.1-P	Field mustard	extracellular	78.6	78.42
Bra032494.1-P	Field mustard	extracellular	78.37	78.19
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	76.51	77.78
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	80.47	76.72
CDY01151	Canola	endoplasmic reticulum, extracellular, vacuole	80.23	76.33
CDY53564	Canola	endoplasmic reticulum, extracellular, vacuole	80.23	75.82
GSMUA_Achr7P04580_001	Banana	endoplasmic reticulum, extracellular	78.6	75.62
GSMUA_Achr3P00290_001	Banana	endoplasmic reticulum, extracellular, vacuole	72.09	75.43
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, golgi	78.14	74.01
VIT_17s0000g09810.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	69.07	73.7
Zm00001d004448_P001	Maize	endoplasmic reticulum	76.28	73.21
AT4G13710.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	79.77	72.98
Zm00001d025067_P001	Maize	mitochondrion	76.98	72.91
CDY18738	Canola	endoplasmic reticulum, extracellular	80.0	72.27
VIT_01s0137g00240.t01	Wine grape	extracellular	67.67	72.21
TraesCS2D01G018000.1	Wheat	golgi	78.6	71.46
VIT_14s0219g00230.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	66.74	71.22
TraesCS2B01G024500.2	Wheat	golgi	79.07	70.69
TraesCS2A01G016500.1	Wheat	golgi	78.6	70.27
KXG25802	Sorghum	plastid	78.6	69.83
CDY66697	Canola	endoplasmic reticulum, golgi	72.09	69.35
Bra015000.1-P	Field mustard	golgi, plasma membrane	72.09	69.35
AT3G24230.1	Thale cress	endoplasmic reticulum, golgi, vacuole	72.33	68.81
CDX77470	Canola	golgi, plasma membrane	72.09	67.54
HORVU2Hr1G002880.2	Barley	mitochondrion	77.44	65.29
VIT_19s0015g00510.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	58.37	62.44
VIT_01s0026g01670.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	57.21	55.53
VIT_01s0026g01680.t01	Wine grape	endoplasmic reticulum, extracellular	56.05	54.4
VIT_10s0116g01160.t01	Wine grape	endoplasmic reticulum, extracellular	47.21	53.28
VIT_17s0000g05740.t01	Wine grape	extracellular	53.02	53.15
VIT_13s0019g04900.t01	Wine grape	extracellular	51.16	52.88
VIT_14s0108g00030.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	53.95	52.85
VIT_13s0019g04910.t01	Wine grape	extracellular	59.53	51.61
VIT_08s0007g04820.t01	Wine grape	plastid	57.44	50.51

Protein Annotations

KEGG:00040+4.2.2.2	EntrezGene:100232902	wikigene:100232902	Gene3D:2.160.20.10	MapMan:21.3.5.2	ProteinID:AAK81877
ProteinID:AAK81877.1	ProteinID:ADO17802	ProteinID:ADO17802.1	EMBL:AM440985	EMBL:AY043234	InterPro:AmbAllergen
ProteinID:CAN78491	ProteinID:CAN78491.1	ProteinID:CBI33346	ProteinID:CBI33346.3	UniProt:D7TS74	EMBL:FN596241
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872
EMBL:HQ333522	InterPro:IPR012334	PFAM:PF00544	EntrezGene:PL1	wikigene:PL1	PRINTS:PR00807
PANTHER:PTHR31683	PANTHER:PTHR31683:SF34	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656
SUPFAM:SSF51126	SignalP:SignalP-noTM	TIGR:TC68391	TMHMM:TMhelix	UniParc:UPI0001BE3F43	ArrayExpress:VIT_05s0051g00590
EnsemblPlantsGene:VIT_05s0051g00590	EnsemblPlants:VIT_05s0051g00590.t01	unigene:Vvi.7185	RefSeq:XP_002285639	RefSeq:XP_002285639.1	SEG:seg

Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:D7TS74]

Coordinates

chr5:-:11375744..11380850

Molecular Weight (calculated)

46984.4 Da

IEP (calculated)

7.939

GRAVY (calculated)

-0.317

Length

430 amino acids

Sequence
(BLAST)

001: MAGSKGWTSL CSLLLFFLFV AVMANDRNGG TEQLQSSNNS SMAARNEHAV DDPDAVASMV DMSIRNSTER RKLGYFSCGT GNPIDDCWRC DHNWQKNRKR
101: LADCGIGFGR NAIGGRDGRF YVVTDPGDDD PVNPKPGTLR HAVIQDAPLW IVFKRDMVIT LKQELIMNSF KTIDGRGVNV HIANGACITV QFVTNVIIHG
201: LHIHDCKPTG NAMVRSSPSH FGWRTMADGD AISIFGSSHI WVDHNSLSSC ADGLVDAVMG STAITISNNH FAHHNEVMLL GHSDSYERDK QMQVTIAYNH
301: FGEGLIQRMP RCRHGYFHVV NNDYTHWEMY AIGGSASPTI NSQGNRYLAP VNPFAKEVTK RVDTPSGQWK GWNWRSEGDL LLNGAYFTPS GAGASASYAR
401: ASSLGAKSSS MVGSITSNAG ALSCRRGSQC

Best Arabidopsis Sequence Match ( AT4G13710.1 )
(BLAST)

001: MASSSQKLIS VCVAVLVVLA LTAMIFRNSE ISLSRKLKTE VIQSSNSSTM AAIRKLKTEE FQSLNSSTMA ATRLDGEPQQ QQHAVADDPD MVADEVAKLV
101: QMSEQNRTAR RKLGFFSCGT GNPIDDCWRC DRNWHKNRKR LADCGIGFGR NAIGGRDGRF YIVTDPTDED VVNPKPGTLR HAVIQEEPLW IVFKRDMVIE
201: LKQELIMNSF KTIDARGSNV HIANGACITI QFITNVIIHG LHIHDCKPTG NAMVRSSPSH FGWRTMADGD AVSIFGSSHI WIDHNSLSHC ADGLVDAVMG
301: STAITVSNNH FTHHNEVMLL GHSDSYTKDK LMQVTIAYNH FGEGLVQRMP RCRHGYFHVV NNDYTHWEMY AIGGSAEPTI NSQGNRYAAP MDRFAKEVTK
401: RVETDASEWK KWNWRSEGDL LLNGAFFRPS GAGASASYGR ASSLAAKPSS MVDTITSTAG ALGCRKGRPC

Arabidopsis Description

Probable pectate lyase 15 [Source:UniProtKB/Swiss-Prot;Acc:Q944R1]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.