Factsheet for GSMUA_Achr11P21910_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole, cytosol

Predictor Summary:

extracellular 4
endoplasmic reticulum 2
vacuole 3
plasma membrane 3
golgi 2
nucleus 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, vacuole
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	extracellular
Plant-mPloc:	extracellular, plasma membrane, plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	extracellular	88.89	87.91
GSMUA_Achr5P15620_001	Banana	cytosol	84.44	86.61
GSMUA_Achr8P12860_001	Banana	cytosol	84.44	86.12
GSMUA_Achr4P26690_001	Banana	extracellular	85.28	83.65
GSMUA_Achr3P00290_001	Banana	endoplasmic reticulum, extracellular, vacuole	85.83	75.18
VIT_05s0051g00590.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	83.89	70.23
GSMUA_Achr7P04580_001	Banana	endoplasmic reticulum, extracellular	85.0	68.46
AT1G04680.1	Thale cress	extracellular	78.61	65.66
KRG90246	Soybean	nucleus	81.67	65.62
KRH33474	Soybean	nucleus	81.67	65.33
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	76.67	65.25
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, golgi	81.67	64.76
CDX86615	Canola	endoplasmic reticulum, extracellular, golgi	77.5	64.73
PGSC0003DMT400076251	Potato	extracellular	80.56	64.73
CDY15517	Canola	endoplasmic reticulum, extracellular, golgi	77.22	64.5
CDY61137	Canola	extracellular	77.22	64.5
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	77.22	64.5
CDX89799	Canola	extracellular	76.94	64.27
Bra015341.1-P	Field mustard	extracellular	76.67	64.04
Solyc09g091430.2.1	Tomato	nucleus	80.0	63.86
Bra032494.1-P	Field mustard	extracellular	76.39	63.81
GSMUA_Achr6P28260_001	Banana	endoplasmic reticulum, extracellular	71.67	63.39
CDY01151	Canola	endoplasmic reticulum, extracellular, vacuole	79.44	63.27
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	79.17	63.19
CDY53564	Canola	endoplasmic reticulum, extracellular, vacuole	79.44	62.86
AT4G13710.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	80.0	61.28
CDY18738	Canola	endoplasmic reticulum, extracellular	79.17	59.87
Bra015000.1-P	Field mustard	golgi, plasma membrane	70.56	56.82
CDY66697	Canola	endoplasmic reticulum, golgi	70.28	56.6
CDX77470	Canola	golgi, plasma membrane	71.11	55.77
AT3G24230.1	Thale cress	endoplasmic reticulum, golgi, vacuole	70.0	55.75
GSMUA_Achr10P...	Banana	cytosol	52.5	54.62
GSMUA_Achr4P25120_001	Banana	extracellular	60.28	48.55
GSMUA_Achr2P16830_001	Banana	endoplasmic reticulum, extracellular	56.67	46.58
GSMUA_Achr6P00830_001	Banana	endoplasmic reticulum, extracellular	54.17	44.62
GSMUA_Achr10P...	Banana	extracellular	46.94	43.33
GSMUA_Achr1P03320_001	Banana	plasma membrane	61.11	43.05
GSMUA_Achr7P08840_001	Banana	nucleus	55.0	29.55

Protein Annotations

EnsemblPlants:GSMUA_Achr11P21910_001	EnsemblPlants:GSMUA_Achr11T21910_001	EnsemblPlantsGene:GSMUA_Achr11G21910_001	Gene3D:2.160.20.10	InterPro:IPR012334	InterPro:Pec_lyase
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31683	PANTHER:PTHR31683:SF34	PFAM:PF00544	SEG:seg
SignalP:SignalP-noTM	SMART:SM00656	SUPFAM:SSF51126	UniParc:UPI0002961B3D	UniProt:M0RUC1	MapMan:21.3.5.2

Description

Probable pectate lyase 15 [Source:GMGC_GENE;Acc:GSMUA_Achr11G21910_001]

Coordinates

chr11:-:22354327..22357308

Molecular Weight (calculated)

39352.3 Da

IEP (calculated)

7.421

GRAVY (calculated)

-0.269

Length

360 amino acids

Sequence
(BLAST)

001: MHRIDWPLLS SICTQVVVGA VDDPELVANE VHMAISNSTA RRALGYLSCG TGNPIDDCWR CDSEWHLHRK RLADCGIGFG RNAIGGRDGR YYQELIMNSF
101: KTIDGRGANV HIANGACITI QFVTNVIIHG LHIHDCKPTG NAMVRSSPSH YGWRTMADGD GVSIFGASHI WVDHNSLSNC ADGLVDAVMG STAITISNNY
201: FTHHNEVMLL GHSDSYVRDK AMQVTIAFNH FGEGLIQRMP RCRHGYFHVV NNDYTHWEMY AIGGSADPTI NSQGNRYLAP TNPFAKEVTK RVDTDSNMWK
301: SWNWRSEGDL LLNGAYFTPS GAGASASYAK ASSLGAKSSS MVGSITSDAG ALGCRKRSQC

Best Arabidopsis Sequence Match ( AT4G13710.1 )
(BLAST)

001: MASSSQKLIS VCVAVLVVLA LTAMIFRNSE ISLSRKLKTE VIQSSNSSTM AAIRKLKTEE FQSLNSSTMA ATRLDGEPQQ QQHAVADDPD MVADEVAKLV
101: QMSEQNRTAR RKLGFFSCGT GNPIDDCWRC DRNWHKNRKR LADCGIGFGR NAIGGRDGRF YIVTDPTDED VVNPKPGTLR HAVIQEEPLW IVFKRDMVIE
201: LKQELIMNSF KTIDARGSNV HIANGACITI QFITNVIIHG LHIHDCKPTG NAMVRSSPSH FGWRTMADGD AVSIFGSSHI WIDHNSLSHC ADGLVDAVMG
301: STAITVSNNH FTHHNEVMLL GHSDSYTKDK LMQVTIAYNH FGEGLVQRMP RCRHGYFHVV NNDYTHWEMY AIGGSAEPTI NSQGNRYAAP MDRFAKEVTK
401: RVETDASEWK KWNWRSEGDL LLNGAFFRPS GAGASASYGR ASSLAAKPSS MVDTITSTAG ALGCRKGRPC

Arabidopsis Description

Probable pectate lyase 15 [Source:UniProtKB/Swiss-Prot;Acc:Q944R1]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.