Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 7
- nucleus 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
22313117
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g091430.2.1 | Tomato | nucleus | 98.44 | 97.78 |
| VIT_05s0051g00590.t01 | Wine grape | endoplasmic reticulum, extracellular, golgi | 81.03 | 84.42 |
| HORVU2Hr1G002930.1 | Barley | cytosol | 51.12 | 83.58 |
| KRG90246 | Soybean | nucleus | 81.25 | 81.25 |
| GSMUA_Achr11P... | Banana | cytosol, extracellular, vacuole | 64.73 | 80.56 |
| KRH33474 | Soybean | nucleus | 80.8 | 80.44 |
| GSMUA_Achr8P12860_001 | Banana | cytosol | 62.95 | 79.89 |
| GSMUA_Achr5P15620_001 | Banana | cytosol | 61.38 | 78.35 |
| AT1G04680.1 | Thale cress | extracellular | 75.22 | 78.19 |
| Bra040809.1-P | Field mustard | endoplasmic reticulum, golgi, vacuole | 72.77 | 77.07 |
| GSMUA_Achr11P... | Banana | extracellular | 62.5 | 76.92 |
| CDY15517 | Canola | endoplasmic reticulum, extracellular, golgi | 73.66 | 76.57 |
| Bra032494.1-P | Field mustard | extracellular | 73.66 | 76.57 |
| Bra030583.1-P | Field mustard | endoplasmic reticulum, extracellular, golgi | 73.66 | 76.57 |
| PGSC0003DMT400040893 | Potato | endoplasmic reticulum, vacuole | 75.0 | 76.54 |
| CDX89799 | Canola | extracellular | 73.44 | 76.33 |
| GSMUA_Achr4P26690_001 | Banana | extracellular | 62.5 | 76.29 |
| CDY61137 | Canola | extracellular | 73.21 | 76.1 |
| CDX86615 | Canola | endoplasmic reticulum, extracellular, golgi | 73.21 | 76.1 |
| Bra015341.1-P | Field mustard | extracellular | 72.77 | 75.64 |
| CDY53564 | Canola | endoplasmic reticulum, extracellular, vacuole | 75.22 | 74.07 |
| CDY01151 | Canola | endoplasmic reticulum, extracellular, vacuole | 74.55 | 73.89 |
| Bra032730.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 74.33 | 73.84 |
| GSMUA_Achr3P00290_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 66.96 | 72.99 |
| GSMUA_Achr7P04580_001 | Banana | endoplasmic reticulum, extracellular | 72.77 | 72.93 |
| PGSC0003DMT400051938 | Potato | endoplasmic reticulum, extracellular | 74.55 | 72.61 |
| PGSC0003DMT400039385 | Potato | extracellular | 65.18 | 72.46 |
| Zm00001d004448_P001 | Maize | endoplasmic reticulum | 71.65 | 71.65 |
| AT4G13710.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 74.78 | 71.28 |
| CDY18738 | Canola | endoplasmic reticulum, extracellular | 75.0 | 70.59 |
| Zm00001d025067_P001 | Maize | mitochondrion | 71.43 | 70.48 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, golgi | 71.43 | 70.48 |
| PGSC0003DMT400027955 | Potato | extracellular | 62.72 | 70.07 |
| PGSC0003DMT400069632 | Potato | vacuole | 62.28 | 68.89 |
| TraesCS2D01G018000.1 | Wheat | golgi | 72.54 | 68.71 |
| KXG25802 | Sorghum | plastid | 73.21 | 67.77 |
| TraesCS2A01G016500.1 | Wheat | golgi | 72.54 | 67.57 |
| TraesCS2B01G024500.2 | Wheat | golgi | 72.54 | 67.57 |
| PGSC0003DMT400032910 | Potato | endoplasmic reticulum, extracellular, vacuole | 60.71 | 67.49 |
| Bra015000.1-P | Field mustard | golgi, plasma membrane | 66.52 | 66.67 |
| AT3G24230.1 | Thale cress | endoplasmic reticulum, golgi, vacuole | 66.74 | 66.15 |
| CDY66697 | Canola | endoplasmic reticulum, golgi | 65.85 | 66.0 |
| CDX77470 | Canola | golgi, plasma membrane | 66.52 | 64.92 |
| HORVU2Hr1G002880.2 | Barley | mitochondrion | 71.21 | 62.55 |
| PGSC0003DMT400009869 | Potato | cytosol | 52.01 | 54.69 |
| PGSC0003DMT400011046 | Potato | mitochondrion | 34.82 | 53.61 |
| PGSC0003DMT400042395 | Potato | extracellular | 45.09 | 53.02 |
| PGSC0003DMT400042396 | Potato | endoplasmic reticulum, extracellular, vacuole | 45.31 | 51.13 |
| PGSC0003DMT400002241 | Potato | extracellular | 48.88 | 49.89 |
| PGSC0003DMT400046723 | Potato | endoplasmic reticulum, golgi, vacuole | 48.44 | 49.89 |
| PGSC0003DMT400083135 | Potato | extracellular | 48.44 | 49.89 |
| PGSC0003DMT400079776 | Potato | plasma membrane | 54.24 | 49.59 |
| PGSC0003DMT400003310 | Potato | extracellular | 48.66 | 48.88 |
| PGSC0003DMT400017862 | Potato | endoplasmic reticulum, extracellular | 43.3 | 48.87 |
| PGSC0003DMT400014086 | Potato | extracellular | 48.66 | 48.77 |
| PGSC0003DMT400014085 | Potato | extracellular, golgi | 42.86 | 48.24 |
| PGSC0003DMT400017863 | Potato | extracellular | 47.54 | 48.19 |
| PGSC0003DMT400045436 | Potato | extracellular | 47.32 | 46.19 |
| PGSC0003DMT400060374 | Potato | extracellular, plasma membrane, vacuole | 53.35 | 41.86 |
Protein Annotations
| KEGG:00040+4.2.2.2 | Gene3D:2.160.20.10 | MapMan:21.3.5.2 | InterPro:AmbAllergen | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016829 | GO:GO:0030570 | GO:GO:0045490 | GO:GO:0046872 | InterPro:IPR012334 | UniProt:M1CWG5 |
| PFAM:PF00544 | EnsemblPlantsGene:PGSC0003DMG400029645 | PGSC:PGSC0003DMG400029645 | EnsemblPlants:PGSC0003DMT400076251 | PRINTS:PR00807 | PANTHER:PTHR31683 |
| PANTHER:PTHR31683:SF63 | InterPro:Pec_lyase | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | SMART:SM00656 | SUPFAM:SSF51126 |
| SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000294DAF4 | SEG:seg | : | : |
Description
Pectase lyase [Source:PGSC_GENE;Acc:PGSC0003DMG400029645]
Coordinates
chr9:-:58238423..58243685
Molecular Weight (calculated)
49413.3 Da
IEP (calculated)
7.614
GRAVY (calculated)
-0.326
Length
448 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSKKWLSFS FSFLLLLLLL VGVYAAGVQS NDGSDTRTVE KEQLLSSENS TMAVSLEEVE EKLSKHAVDD PEEVVAMVAE SIRNSTERRK LGYFSCGTGN
101: PIDDCWRCDP NWQKNRKRLA DCGIGFGRNA IGGRDGRYYV VTDNRDDDPV NPRPGTIRHA VIQEEPLWIV FSRDMVIQLK QELIMNSFKT IDARGYNVHI
201: ANGACLTIQF VTNIIIHGLH IHDCKPTGNA MVRSSTTHFG WRTMADGDAI SIFGSSHVWV DHNSLSHCAD GLVDAVMGST AITISNNHFA HHNEVMLLGH
301: SDSYTKDKQM QVTIAYNHFG EGLIQRMPRC RHGYFHVVNN DYTHWEMYAI GGSANPTINS QGNRYLAPTN RFAKEVTKRV DTATGQWKGW NWRSSGDLML
401: NGAYFTPSGA GASASYARAS SLGAKSSSMV GAITSSAGPL ACRRSSTC
101: PIDDCWRCDP NWQKNRKRLA DCGIGFGRNA IGGRDGRYYV VTDNRDDDPV NPRPGTIRHA VIQEEPLWIV FSRDMVIQLK QELIMNSFKT IDARGYNVHI
201: ANGACLTIQF VTNIIIHGLH IHDCKPTGNA MVRSSTTHFG WRTMADGDAI SIFGSSHVWV DHNSLSHCAD GLVDAVMGST AITISNNHFA HHNEVMLLGH
301: SDSYTKDKQM QVTIAYNHFG EGLIQRMPRC RHGYFHVVNN DYTHWEMYAI GGSANPTINS QGNRYLAPTN RFAKEVTKRV DTATGQWKGW NWRSSGDLML
401: NGAYFTPSGA GASASYARAS SLGAKSSSMV GAITSSAGPL ACRRSSTC
001: MASSSQKLIS VCVAVLVVLA LTAMIFRNSE ISLSRKLKTE VIQSSNSSTM AAIRKLKTEE FQSLNSSTMA ATRLDGEPQQ QQHAVADDPD MVADEVAKLV
101: QMSEQNRTAR RKLGFFSCGT GNPIDDCWRC DRNWHKNRKR LADCGIGFGR NAIGGRDGRF YIVTDPTDED VVNPKPGTLR HAVIQEEPLW IVFKRDMVIE
201: LKQELIMNSF KTIDARGSNV HIANGACITI QFITNVIIHG LHIHDCKPTG NAMVRSSPSH FGWRTMADGD AVSIFGSSHI WIDHNSLSHC ADGLVDAVMG
301: STAITVSNNH FTHHNEVMLL GHSDSYTKDK LMQVTIAYNH FGEGLVQRMP RCRHGYFHVV NNDYTHWEMY AIGGSAEPTI NSQGNRYAAP MDRFAKEVTK
401: RVETDASEWK KWNWRSEGDL LLNGAFFRPS GAGASASYGR ASSLAAKPSS MVDTITSTAG ALGCRKGRPC
101: QMSEQNRTAR RKLGFFSCGT GNPIDDCWRC DRNWHKNRKR LADCGIGFGR NAIGGRDGRF YIVTDPTDED VVNPKPGTLR HAVIQEEPLW IVFKRDMVIE
201: LKQELIMNSF KTIDARGSNV HIANGACITI QFITNVIIHG LHIHDCKPTG NAMVRSSPSH FGWRTMADGD AVSIFGSSHI WIDHNSLSHC ADGLVDAVMG
301: STAITVSNNH FTHHNEVMLL GHSDSYTKDK LMQVTIAYNH FGEGLVQRMP RCRHGYFHVV NNDYTHWEMY AIGGSAEPTI NSQGNRYAAP MDRFAKEVTK
401: RVETDASEWK KWNWRSEGDL LLNGAFFRPS GAGASASYGR ASSLAAKPSS MVDTITSTAG ALGCRKGRPC
Arabidopsis Description
Probable pectate lyase 15 [Source:UniProtKB/Swiss-Prot;Acc:Q944R1]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.