Factsheet for PGSC0003DMT400046723

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 6
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g113150.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	97.24	97.24
PGSC0003DMT400083135	Potato	extracellular	73.79	73.79
VIT_17s0000g05740.t01	Wine grape	extracellular	70.34	71.33
KRH63402	Soybean	extracellular	63.68	63.68
TraesCS4A01G385700.1	Wheat	cytosol	31.95	63.47
GSMUA_Achr6P00830_001	Banana	endoplasmic reticulum, extracellular	63.22	62.93
GSMUA_Achr10P...	Banana	extracellular	55.86	62.31
GSMUA_Achr2P16830_001	Banana	endoplasmic reticulum, extracellular	62.3	61.87
KRH54508	Soybean	extracellular	47.13	61.56
PGSC0003DMT400003310	Potato	extracellular	61.15	59.64
PGSC0003DMT400014086	Potato	extracellular	60.46	58.84
PGSC0003DMT400002241	Potato	extracellular	59.31	58.77
GSMUA_Achr10P...	Banana	cytosol	46.67	58.67
HORVU6Hr1G038630.1	Barley	extracellular	53.56	57.53
OQU75805	Sorghum	mitochondrion	57.7	56.79
PGSC0003DMT400017863	Potato	extracellular	57.7	56.79
Zm00001d000216_P001	Maize	golgi, vacuole	56.78	56.39
TraesCS7D01G356700.1	Wheat	extracellular	57.24	56.08
PGSC0003DMT400017862	Potato	endoplasmic reticulum, extracellular	51.03	55.92
Os02t0214400-01	Rice	plasma membrane	57.24	55.83
EES06507	Sorghum	golgi, vacuole	57.01	55.73
TraesCS7A01G365700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	56.78	55.63
Os06t0144200-01	Rice	extracellular, plasma membrane	57.47	55.56
TraesCS7B01G261700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	56.55	55.41
TraesCS7A01G086600.1	Wheat	endoplasmic reticulum, extracellular	57.01	55.36
PGSC0003DMT400039385	Potato	extracellular	50.57	54.59
HORVU7Hr1G085860.1	Barley	endoplasmic reticulum, extracellular, vacuole	55.63	54.5
Os06t0583900-01	Rice	plasma membrane	55.86	54.24
TraesCS6D01G170500.1	Wheat	golgi	52.87	54.12
TraesCS6B01G211900.1	Wheat	extracellular, golgi, vacuole	52.87	54.12
EER88571	Sorghum	endoplasmic reticulum, plasma membrane	56.09	53.74
PGSC0003DMT400027955	Potato	extracellular	49.43	53.62
PGSC0003DMT400069632	Potato	vacuole	49.89	53.58
Zm00001d046389_P007	Maize	endoplasmic reticulum, extracellular	53.33	53.58
PGSC0003DMT400014085	Potato	extracellular, golgi	48.51	53.02
Zm00001d036158_P001	Maize	endoplasmic reticulum, extracellular, vacuole	54.48	52.32
PGSC0003DMT400032910	Potato	endoplasmic reticulum, extracellular, vacuole	48.05	51.86
Os06t0144900-01	Rice	mitochondrion	55.4	50.95
TraesCS6A01G184500.2	Wheat	extracellular, golgi, vacuole	53.79	50.54
PGSC0003DMT400045436	Potato	extracellular	53.1	50.33
PGSC0003DMT400040893	Potato	endoplasmic reticulum, vacuole	50.57	50.11
EER87830	Sorghum	endoplasmic reticulum, extracellular, vacuole	53.33	49.89
Zm00001d036945_P001	Maize	endoplasmic reticulum	48.05	49.76
PGSC0003DMT400076251	Potato	extracellular	49.89	48.44
PGSC0003DMT400011046	Potato	mitochondrion	31.95	47.77
PGSC0003DMT400051938	Potato	endoplasmic reticulum, extracellular	50.11	47.39
HORVU7Hr1G019500.1	Barley	mitochondrion	56.55	47.31
PGSC0003DMT400042395	Potato	extracellular	41.38	47.24
PGSC0003DMT400009869	Potato	cytosol	44.83	45.77
PGSC0003DMT400042396	Potato	endoplasmic reticulum, extracellular, vacuole	41.15	45.09
GSMUA_Achr7P08840_001	Banana	nucleus	63.91	41.49
PGSC0003DMT400079776	Potato	plasma membrane	46.44	41.22
PGSC0003DMT400060374	Potato	extracellular, plasma membrane, vacuole	45.98	35.03

Protein Annotations

KEGG:00040+4.2.2.2	EntrezGene:102595189	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334
UniProt:M1BJI2	PFAM:PF00544	PFAM:PF04431	EnsemblPlantsGene:PGSC0003DMG400018142	PGSC:PGSC0003DMG400018142	EnsemblPlants:PGSC0003DMT400046723
PRINTS:PR00807	PANTHER:PTHR31683	PANTHER:PTHR31683:SF7	InterPro:Pec_lyase	InterPro:Pec_lyase_N	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002948BE4
RefSeq:XP_006344502.1	SEG:seg	:	:	:	:

Description

Pectate lyase [Source:PGSC_GENE;Acc:PGSC0003DMG400018142]

Coordinates

chr3:+:52968010..52970815

Molecular Weight (calculated)

48613.5 Da

IEP (calculated)

9.964

GRAVY (calculated)

-0.320

Length

435 amino acids

Sequence
(BLAST)

001: MGLTKRNLFL FLVLVVLVVS IEAHIKEFDE VWKKRAQQAK KAARHAYNPN PKIVADHLNY QVDKAVRGSN SRRRDLHRYS GKCMATNPID QCWRCDPNWA
101: RNRMKLTDCV LGFGRKTTGG KGGKIYVVMD NSDNELVNPK PGTLRHAVIQ PEPLWIIFAK NMVIRLNQEL IMTSNKTIDA RGRQVHIAHG GGLMLQFVHN
201: VLISNLHIHD TKAGSGGLIR DSVSHYGYRS KSDGDGISIF GSTNVWIDHI SMSNCQDGLI DAVEGSTAIT ISNCHFTKHN DVMLFGASDT ASGDSVMQIT
301: LAFNHFGHGL TQRMPRIRWG FVHAVNNDYT HWLMYAIGGS MHPTILSQGN RFIAPPNPNA KEVTKRDYAP ENVWKNWVWK SQGDLMMNGA FFVESGDPKH
401: AFLKGPDMIT SKPGSFVSSL TRFSGSLKCI EGRPC

Best Arabidopsis Sequence Match ( AT1G14420.1 )
(BLAST)

001: MAAAFLNLGG YVFVFFSSFL AIVAPQVRGN VAVFDSYWTQ RQSDALKQTI GSYDPHPLNV TNHFNYHVNI AVDASESRND TRRELTQVRS GRKTHKSSGK
101: CLAYNPIDNC WRCDRNWANN RKKLADCVLG FGRRTTGGKD GPIYVVKDAS DNDLINPKPG TLRHAVTRDG PLWIIFARSM IIKLQQELMI TSDKTIDGRG
201: ARVYIMEGAG LTLQFVNNVI IHNIYVKHIV PGNGGLIRDS EAHIGLRTKS DGDGISLFGA TNIWIDHVSM TRCADGMIDA IDGSTAVTIS NSHFTDHQEV
301: MLFGARDEHV IDKKMQITVA FNHFGKRLEQ RMPRCRYGTI HVVNNDYTHW EMYAIGGNMN PTIISQGNRF IAPPNEEAKQ ITKREYTPYG EWKSWNWQSE
401: GDYFLNGAYF VQSGKANAWS SKPKTPLPNK FTIRPKPGTM VRKLTMDAGV LGCKLGEAC

Arabidopsis Description

AT59Probable pectate lyase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S2]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.