Skip to main content
crop-pal logo
Sorghum
Search for another protein from :
Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi, vacuole

Predictor Summary:
  • nucleus 1
  • extracellular 5
  • mitochondrion 1
  • vacuole 4
  • plastid 1
  • endoplasmic reticulum 3
  • plasma membrane 3
  • golgi 4
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:golgi, vacuole
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:nucleus
EpiLoc:extracellular
iPSORT:mitochondrion
MultiLoc:vacuole
Plant-mPloc:extracellular, plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:golgi
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os02t0214400-01 Rice plasma membrane 71.91 71.75
HORVU6Hr1G038630.1 Barley extracellular 61.12 67.16
EER88571 Sorghum endoplasmic reticulum, plasma membrane 66.29 64.98
TraesCS6D01G170500.1 Wheat golgi 61.35 64.24
TraesCS6B01G211900.1 Wheat extracellular, golgi, vacuole 60.9 63.76
VIT_17s0000g05740.t01 Wine grape extracellular 57.98 60.14
GSMUA_Achr10P... Banana extracellular 52.36 59.74
GSMUA_Achr6P00830_001 Banana endoplasmic reticulum, extracellular 58.65 59.73
TraesCS6A01G184500.2 Wheat extracellular, golgi, vacuole 61.35 58.96
VIT_01s0026g01670.t01 Wine grape endoplasmic reticulum, extracellular, vacuole 58.65 58.92
PGSC0003DMT400083135 Potato extracellular 57.3 58.62
VIT_14s0108g00030.t01 Wine grape endoplasmic reticulum, extracellular, vacuole 57.75 58.54
Solyc06g071020.2.1 Tomato extracellular 56.63 57.93
OQU75805 Sorghum mitochondrion 57.53 57.92
GSMUA_Achr10P... Banana cytosol 44.94 57.8
GSMUA_Achr2P16830_001 Banana endoplasmic reticulum, extracellular 56.85 57.76
Solyc03g113150.2.1 Tomato endoplasmic reticulum, golgi, vacuole 55.96 57.24
KRH18498 Soybean endoplasmic reticulum, extracellular, vacuole 56.85 57.11
KRG93502 Soybean extracellular 56.85 57.11
PGSC0003DMT400046723 Potato endoplasmic reticulum, golgi, vacuole 55.73 57.01
KRH63402 Soybean extracellular 55.51 56.78
KRH01130 Soybean extracellular 55.73 56.36
VIT_01s0026g01680.t01 Wine grape endoplasmic reticulum, extracellular 55.73 55.98
KRH54508 Soybean extracellular 41.8 55.86
PGSC0003DMT400002241 Potato extracellular 54.16 54.9
Solyc01g010740.2.1 Tomato endoplasmic reticulum, extracellular 54.16 54.9
Solyc02g087670.2.1 Tomato extracellular 54.61 54.48
PGSC0003DMT400003310 Potato extracellular 54.16 54.04
KRH45851 Soybean extracellular 54.38 53.66
KRH74782 Soybean extracellular 53.93 53.57
PGSC0003DMT400014086 Potato extracellular 53.71 53.47
PGSC0003DMT400017862 Potato endoplasmic reticulum, extracellular 47.64 53.4
PGSC0003DMT400017863 Potato extracellular 53.03 53.39
Solyc03g058890.2.1 Tomato extracellular 53.71 53.23
AT1G14420.1 Thale cress endoplasmic reticulum 54.61 52.94
Solyc03g058910.2.1 Tomato extracellular, golgi 46.97 52.51
Bra016700.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 53.93 52.4
CDX96854 Canola endoplasmic reticulum, extracellular, plasma membrane 53.93 52.4
PGSC0003DMT400014085 Potato extracellular, golgi 46.74 52.26
Bra026832.1-P Field mustard extracellular 53.03 52.21
CDY68729 Canola endoplasmic reticulum, extracellular, plasma membrane 53.71 52.18
EER87830 Sorghum endoplasmic reticulum, extracellular, vacuole 53.71 51.4
Bra026221.1-P Field mustard endoplasmic reticulum 52.81 51.31
KRH69345 Soybean extracellular 51.46 51.23
CDX91953 Canola endoplasmic reticulum, extracellular 54.16 51.17
CDX74293 Canola endoplasmic reticulum, extracellular 54.16 51.17
Bra001011.1-P Field mustard endoplasmic reticulum, extracellular 53.93 50.96
AT3G01270.1 Thale cress endoplasmic reticulum, extracellular 54.38 50.95
CDY04133 Canola extracellular 52.36 50.76
CDY17432 Canola extracellular 52.36 50.76
Bra017412.1-P Field mustard extracellular 52.36 50.76
CDY39314 Canola extracellular 52.36 50.76
CDY28691 Canola endoplasmic reticulum, extracellular, vacuole 53.48 50.75
Solyc05g007080.2.1 Tomato extracellular 51.91 50.66
PGSC0003DMT400045436 Potato extracellular 51.91 50.33
AT5G15110.1 Thale cress endoplasmic reticulum, extracellular 52.81 49.79
AT2G02720.1 Thale cress extracellular, vacuole 50.79 49.67
CDX85564 Canola extracellular 52.58 49.47
KXG22892 Sorghum cytosol 30.79 49.46
Bra026583.1-P Field mustard endoplasmic reticulum, plasma membrane 50.56 49.23
CDY03043 Canola extracellular 50.56 49.02
Bra023504.1-P Field mustard extracellular 52.81 48.86
CDY63769 Canola extracellular 52.58 48.85
Bra024811.1-P Field mustard extracellular 50.34 48.8
CDY45202 Canola extracellular 50.34 48.8
CDY66593 Canola endoplasmic reticulum, extracellular 54.38 48.5
Bra006279.1-P Field mustard endoplasmic reticulum, extracellular 51.69 48.42
CDX70590 Canola endoplasmic reticulum, extracellular 51.69 48.42
CDX78607 Canola endoplasmic reticulum, extracellular 51.69 48.42
CDX81636 Canola endoplasmic reticulum 52.58 48.35
CDX69550 Canola endoplasmic reticulum, extracellular 54.16 48.3
Bra008721.1-P Field mustard endoplasmic reticulum, extracellular 54.16 48.3
CDY53552 Canola extracellular 53.03 47.68
KXG25802 Sorghum plastid 48.54 44.63
KXG38421 Sorghum extracellular 47.19 43.57
GSMUA_Achr7P08840_001 Banana nucleus 55.96 37.16
Solyc02g067450.2.1 Tomato extracellular 50.79 36.69
CDY04136 Canola mitochondrion, nucleus 0.22 0.66
Protein Annotations
KEGG:00040+4.2.2.2Gene3D:2.160.20.10MapMan:21.3.5.2EntrezGene:8071678InterPro:AmbAllergenUniProt:C5XY12
EnsemblPlants:EES06507ProteinID:EES06507ProteinID:EES06507.1GO:GO:0003674GO:GO:0003824GO:GO:0005488
GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009987GO:GO:0016829
GO:GO:0030570GO:GO:0045490GO:GO:0046872InterPro:IPR012334PFAM:PF00544PFAM:PF04431
PRINTS:PR00807PANTHER:PTHR31683PANTHER:PTHR31683:SF32InterPro:Pec_lyaseInterPro:Pec_lyase_NInterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulenceSMART:SM00656EnsemblPlantsGene:SORBI_3004G091000SUPFAM:SSF51126TMHMM:TMhelixUniParc:UPI0001A85D2C
RefSeq:XP_002453531.1SEG:seg::::
Description
hypothetical protein
Coordinates
chr4:-:7738707..7740797
Molecular Weight (calculated)
49607.3 Da
IEP (calculated)
9.260
GRAVY (calculated)
-0.328
Length
445 amino acids
Sequence
(BLAST)
001: METTTKQLRW SRPGSLLLVA AAFLASAALS TANIADFDEH WQKRKELAEA SVRETYRPDP YNVTNSFNVA VHRATSLRRT MREMPRKHKK KGPCRATNPI
101: DKCWRCKNDW ATDRFRLARC ARGFGQATTG GLGGPIYIVT DPSDGDVVNP RPGTLRWGVI QPGPLWIIFA KSMIIQLSQE LLVSSDKTID GRGAQVHIAN
201: GAGITVQLAR NVIIHNLHVH DVLHSMGGLM RDSPTHVGSR TKADGDGISL FQATNVWIDH ISMSNCEDGL IDVVQSSTGI TISNCHFTNH NDVMLFGASD
301: SYPQDQMMQI TVAFNHFGRG LVQRMPRCRW GFFHVVNNDY THWLMYAIGG GKAPTIISQG NRYIAPPNIA AKVITKHYAE EGEWKNWVWH TEDDLFMNGA
401: IFEPSGGAVQ RQINSNEWVK PKPGTYVTRL TRFSGTLSCC MSKPC
Best Arabidopsis Sequence Match ( AT1G14420.1 )
(BLAST)
001: MAAAFLNLGG YVFVFFSSFL AIVAPQVRGN VAVFDSYWTQ RQSDALKQTI GSYDPHPLNV TNHFNYHVNI AVDASESRND TRRELTQVRS GRKTHKSSGK
101: CLAYNPIDNC WRCDRNWANN RKKLADCVLG FGRRTTGGKD GPIYVVKDAS DNDLINPKPG TLRHAVTRDG PLWIIFARSM IIKLQQELMI TSDKTIDGRG
201: ARVYIMEGAG LTLQFVNNVI IHNIYVKHIV PGNGGLIRDS EAHIGLRTKS DGDGISLFGA TNIWIDHVSM TRCADGMIDA IDGSTAVTIS NSHFTDHQEV
301: MLFGARDEHV IDKKMQITVA FNHFGKRLEQ RMPRCRYGTI HVVNNDYTHW EMYAIGGNMN PTIISQGNRF IAPPNEEAKQ ITKREYTPYG EWKSWNWQSE
401: GDYFLNGAYF VQSGKANAWS SKPKTPLPNK FTIRPKPGTM VRKLTMDAGV LGCKLGEAC
Arabidopsis Description
AT59Probable pectate lyase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S2]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.