CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0293500-01	Rice	extracellular	66.79	49.6
TraesCS6D01G129200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	66.79	48.94
TraesCS6A01G139800.1	Wheat	endoplasmic reticulum, extracellular, vacuole	66.06	48.41
HORVU6Hr1G027330.1	Barley	extracellular	65.34	47.38
TraesCS6B01G168400.1	Wheat	plastid	64.98	47.37
OQU75805	Sorghum	mitochondrion	51.99	32.58
KXG25802	Sorghum	plastid	56.32	32.23
EER88571	Sorghum	endoplasmic reticulum, plasma membrane	52.71	32.16
KXG38421	Sorghum	extracellular	55.6	31.95
EER87830	Sorghum	endoplasmic reticulum, extracellular, vacuole	52.71	31.4
EES06507	Sorghum	golgi, vacuole	49.46	30.79

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	UniProt:A0A1B6PAZ7	InterPro:AmbAllergen	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334
EnsemblPlants:KXG22892	ProteinID:KXG22892	ProteinID:KXG22892.2	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF22	InterPro:PbH1	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656
SMART:SM00710	EnsemblPlantsGene:SORBI_3008G022800	SUPFAM:SSF51126	UniParc:UPI000B8BA1A5	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:+:2000754..2001716

Molecular Weight (calculated)

30138.4 Da

IEP (calculated)

5.939

GRAVY (calculated)

-0.323

Length

277 amino acids

Sequence
(BLAST)

001: MPSLHRRRMV GECSSGNPVD DCWRCDPSWS DNRQRLADCA VGFGRGSTGG KNGKSYVVTD PSDDADAASP APGTLRYGVI QQEPLWITFA RDMTIRPKQD
101: LVVASDKTVD GRGAGVVVGD GGACFVLRNV SNVIIHGLTI RDCRPAQATS SSSESQGDGI TVFSSTDVWV DHCTLEACAD GLIDVTDGST NVTLSNNVLR
201: NHNKTMLLGH SDDFTDDKNM KVTVAFNRFG PGLIQRMPRC RFGLFHVIKN DYINWEIYAI GGQCFANNSE PWQSIPC

Best Arabidopsis Sequence Match ( AT1G04680.1 )
(BLAST)

001: MAVLPTWLLA MMCLLFFVGA MENTTHDNIS SLPRSDETEW NQHAVTNPDE VADEVLALTE MSVRNHTERR KLGYFTCGTG NPIDDCWRCD PNWHKNRKRL
101: ADCGIGFGRN AIGGRDGRFY VVTDPRDDNP VNPRPGTLRH AVIQDRPLWI VFKRDMVIQL KQELIVNSFK TIDGRGANVH IANGGCITIQ FVTNVIVHGL
201: HIHDCKPTGN AMVRSSETHF GWRTMADGDA ISIFGSSHVW IDHNSLSHCA DGLVDAVMGS TAITISNNHL THHNEVMLLG HSDSYMRDKA MQVTIAYNHF
301: GVGLIQRMPR CRHGYFHVVN NDYTHWEMYA IGGSANPTIN SQGNRYAAPK NPFAKEVTKR VDTPASHWKG WNWRSEGDLL QNGAYFTSSG AAASGSYARA
401: SSLSAKSSSL VGHITSDAGA LPCRRGRQCS S

Arabidopsis Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:A0A178W464]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.