Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 5
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G129200.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 95.5 | 95.5 |
| TraesCS6B01G168400.1 | Wheat | plastid | 94.97 | 94.47 |
| HORVU6Hr1G027330.1 | Barley | extracellular | 91.01 | 90.05 |
| Os05t0293500-01 | Rice | extracellular | 68.52 | 69.44 |
| KXG22892 | Sorghum | cytosol | 48.41 | 66.06 |
| TraesCS4A01G385700.1 | Wheat | cytosol | 28.31 | 48.86 |
| TraesCS2A01G016500.1 | Wheat | golgi | 56.88 | 44.7 |
| TraesCS1A01G143600.1 | Wheat | extracellular | 55.03 | 43.33 |
| TraesCS7A01G365700.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 50.53 | 43.02 |
| TraesCS7A01G086600.1 | Wheat | endoplasmic reticulum, extracellular | 48.94 | 41.29 |
| TraesCS6A01G184500.2 | Wheat | extracellular, golgi, vacuole | 50.0 | 40.82 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G139800.1 | EnsemblPlantsGene:TraesCS6A01G139800 | Gene3D:2.160.20.10 | InterPro:AmbAllergen | InterPro:IPR012334 | InterPro:Pec_lyase |
| InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | KEGG:00040+4.2.2.2 | PANTHER:PTHR31683 | PANTHER:PTHR31683:SF22 | PFAM:PF00544 |
| PRINTS:PR00807 | SEG:seg | SignalP:SignalP-noTM | SMART:SM00656 | SUPFAM:SSF51126 | MapMan:21.3.5.2 |
Description
No Description!
Coordinates
chr6A:-:114991961..114993494
Molecular Weight (calculated)
40365.0 Da
IEP (calculated)
8.489
GRAVY (calculated)
-0.149
Length
378 amino acids
Sequence
(BLAST)
(BLAST)
001: MAILLFLFFT SILSISYSSP LPVNASGNIS ARRQAGCGTG NPVDDCWRCD PCWADNRQRL ADCAIGFGRN AIGGKGGRTY VVTDPGDEDP ANPAPGTLRY
101: GLVQDEPLWI IFACNMTIRP KRELVVSSHK TVDGRGASVV VGEGGACFTV RNRSNVIIHG ITIRGCRPAP KSSARTGHLS DGDGVSIFGA RDVWVDRCTL
201: EDCADGLVDV IAASTGVTVS NCLLTNHNKA MLLGHNDGYE DDRAMRVTVA FNRFGPGLVQ RMPRCRFGVF HVVNNDYVNW GKYAIGGSAS PTILSRGNRF
301: CAGKKKEVTK RDGDPPKSEW QKWNWISDGD LMFNGAFFTA SGGPGAEVKA PSFAKPASFV APMTASAGAL SCSKGSLC
101: GLVQDEPLWI IFACNMTIRP KRELVVSSHK TVDGRGASVV VGEGGACFTV RNRSNVIIHG ITIRGCRPAP KSSARTGHLS DGDGVSIFGA RDVWVDRCTL
201: EDCADGLVDV IAASTGVTVS NCLLTNHNKA MLLGHNDGYE DDRAMRVTVA FNRFGPGLVQ RMPRCRFGVF HVVNNDYVNW GKYAIGGSAS PTILSRGNRF
301: CAGKKKEVTK RDGDPPKSEW QKWNWISDGD LMFNGAFFTA SGGPGAEVKA PSFAKPASFV APMTASAGAL SCSKGSLC
001: MRMTLVHLSL SLFSCLLLVL SPTFIASTPV SEPELVVQEV NEKINASRRN LGVLSCGTGN PIDDCWRCDP KWEKNRQRLA DCAIGFGKHA IGGRDGKIYV
101: VTDSSDKDVV NPKPGTLRHA VIQDEPLWII FARDMVIKLK EELIMNSFKT IDGRGASVHI AGGACITVQY VTNIIIHGVN IHDCKRKGNA YVRDSPSHYG
201: WRTASDGDAV SIFGGSHVWV DHCSLSNCAD GLIDAIHGST AITISNNYLS HHNKVMLLGH SDSYTRDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN
301: DYTHWQMYAI GGSAAPTINS QGNRFLAPND HVFKEVTKYE DAPRSKWKKW NWRSEGDLFL NGAFFTPSGG GASSSYAKAS SLSARPSSLV ASVTSNAGAL
401: FCRKGSRC
101: VTDSSDKDVV NPKPGTLRHA VIQDEPLWII FARDMVIKLK EELIMNSFKT IDGRGASVHI AGGACITVQY VTNIIIHGVN IHDCKRKGNA YVRDSPSHYG
201: WRTASDGDAV SIFGGSHVWV DHCSLSNCAD GLIDAIHGST AITISNNYLS HHNKVMLLGH SDSYTRDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN
301: DYTHWQMYAI GGSAAPTINS QGNRFLAPND HVFKEVTKYE DAPRSKWKKW NWRSEGDLFL NGAFFTPSGG GASSSYAKAS SLSARPSSLV ASVTSNAGAL
401: FCRKGSRC
Arabidopsis Description
Probable pectate lyase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXD8]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.