Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 6
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G142400.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 97.08 | 97.49 |
| TraesCS1B01G161000.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 96.46 | 97.27 |
| Os10t0457200-01 | Rice | plasma membrane | 85.21 | 83.3 |
| HORVU1Hr1G038220.7 | Barley | endoplasmic reticulum, extracellular | 83.54 | 82.34 |
| KXG38421 | Sorghum | extracellular | 82.08 | 81.74 |
| Zm00001d032806_P001 | Maize | cytosol, plastid | 70.0 | 77.78 |
| GSMUA_Achr4P25120_001 | Banana | extracellular | 60.83 | 65.32 |
| PGSC0003DMT400009869 | Potato | cytosol | 54.79 | 61.74 |
| GSMUA_Achr1P03320_001 | Banana | plasma membrane | 65.0 | 61.06 |
| Bra006976.1-P | Field mustard | cytosol | 57.29 | 60.18 |
| KRH67761 | Soybean | endoplasmic reticulum, extracellular, vacuole | 57.71 | 58.94 |
| CDX73573 | Canola | extracellular | 58.33 | 58.82 |
| VIT_08s0007g04820.t01 | Wine grape | plastid | 59.58 | 58.49 |
| CDX78152 | Canola | extracellular | 57.71 | 58.19 |
| KRH19954 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 57.08 | 57.44 |
| Solyc09g008380.2.1 | Tomato | nucleus | 57.71 | 57.35 |
| AT3G53190.1 | Thale cress | extracellular | 57.29 | 56.94 |
| Bra028549.1-P | Field mustard | plasma membrane | 57.5 | 56.33 |
| CDX67560 | Canola | plasma membrane | 57.5 | 56.33 |
| TraesCS2A01G016500.1 | Wheat | golgi | 55.42 | 55.3 |
| TraesCS6A01G139800.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 43.33 | 55.03 |
| TraesCS4A01G385700.1 | Wheat | cytosol | 25.0 | 54.79 |
| CDY13312 | Canola | plasma membrane | 56.25 | 50.37 |
| TraesCS7A01G086600.1 | Wheat | endoplasmic reticulum, extracellular | 45.42 | 48.66 |
| TraesCS7A01G365700.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 42.5 | 45.95 |
| TraesCS6A01G184500.2 | Wheat | extracellular, golgi, vacuole | 41.25 | 42.76 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G143600.1 | EnsemblPlantsGene:TraesCS1A01G143600 | Gene3D:2.160.20.10 | InterPro:AmbAllergen | InterPro:IPR012334 | InterPro:Pec_lyase |
| InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | KEGG:00040+4.2.2.2 | PANTHER:PTHR31683 | PANTHER:PTHR31683:SF11 | PFAM:PF00544 |
| PRINTS:PR00807 | SEG:seg | SignalP:SignalP-noTM | SMART:SM00656 | SUPFAM:SSF51126 | TMHMM:TMhelix |
| MapMan:21.3.5.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1A:-:248429233..248435357
Molecular Weight (calculated)
50955.2 Da
IEP (calculated)
6.384
GRAVY (calculated)
-0.117
Length
480 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGAPKSTLI ILLLPFLLLG AAASALPLLN SSLPDPAAVV ADFHSKVTTS RRRMQETGGG GGCMTGNPID DCWRCAGTDW WKDRQRLADC GIGFGRNALG
101: GKGGPFYVVT DSSDRDPVNP APGTLRHAAI QEGPLWIVFA ADMTIRLNEE LLVNSYKTID GRGANVHVAG GACITLQYVS NVIIHNLHVH DCVPAGNANV
201: RSSPTHYGWR TRSDGDGISL FSARDVWVDH CALSRCADGL VDAIMGSTGI TVSNSYFSHH DEVMLLGHSD GYLPDSGMQV TIAFNHFGVQ LVQRMPRCRR
301: GYFHIVNNDY TAWEMYAIGG SASPTINSQG NRYIAPANPN AKEVTKRVDT EEGQWNGWNW RTEGDMMVNG AFFVPSGEGM ENIYDKASSG VDPKSSALVD
401: QLTIGAGVLG GPRDNGEASA YVGFNYAGSA TGGGGGGSGG NGYGSLGMVY ANSGDRGCRS HLILSLTTLV LALICCVRLD
101: GKGGPFYVVT DSSDRDPVNP APGTLRHAAI QEGPLWIVFA ADMTIRLNEE LLVNSYKTID GRGANVHVAG GACITLQYVS NVIIHNLHVH DCVPAGNANV
201: RSSPTHYGWR TRSDGDGISL FSARDVWVDH CALSRCADGL VDAIMGSTGI TVSNSYFSHH DEVMLLGHSD GYLPDSGMQV TIAFNHFGVQ LVQRMPRCRR
301: GYFHIVNNDY TAWEMYAIGG SASPTINSQG NRYIAPANPN AKEVTKRVDT EEGQWNGWNW RTEGDMMVNG AFFVPSGEGM ENIYDKASSG VDPKSSALVD
401: QLTIGAGVLG GPRDNGEASA YVGFNYAGSA TGGGGGGSGG NGYGSLGMVY ANSGDRGCRS HLILSLTTLV LALICCVRLD
001: MMLQRSCIVL FFSLFLLVPQ MVFSMLNRTL LLIPHPDPEL VAYQVQWKVN ASITRRQALD TTDQAGSTPC ITGNPIDDCW KCDPNWPNNR QGLADCGIGF
101: GQYALGGKGG QFYFVTDSSD DDAVNPKPGT LRYGVIQEEP LWIVFPSNMM IKLKQELIFN SYKTLDGRGA NVHIVGGGCI TLQYVSNIII HNIHIHHCYQ
201: SGNTNVRSSP THYGFRTKSD GDGISIFGSK DIWIDHCSLS RCKDGLIDAV MGSTGITISN NFFSHHNEVM LLGHSDHYEP DSGMQVTIAF NHFGEKLIQR
301: MPRCRRGYIH VVNNDFTQWE MYAIGGSGNP TINSQGNRYT APTNPFAKEV TKRVETPDGD WKGWNWRSEG DILVNGAFFV ASGEGAEMRY EKAYSVEPKS
401: ASFITQITFH SGVLGVGGRN NNLGMWTTTG SEGTSGLDSY NDYTDEMSGA GSTNRLSFSV LVFLLSSISY LVVFTSSTQM FML
101: GQYALGGKGG QFYFVTDSSD DDAVNPKPGT LRYGVIQEEP LWIVFPSNMM IKLKQELIFN SYKTLDGRGA NVHIVGGGCI TLQYVSNIII HNIHIHHCYQ
201: SGNTNVRSSP THYGFRTKSD GDGISIFGSK DIWIDHCSLS RCKDGLIDAV MGSTGITISN NFFSHHNEVM LLGHSDHYEP DSGMQVTIAF NHFGEKLIQR
301: MPRCRRGYIH VVNNDFTQWE MYAIGGSGNP TINSQGNRYT APTNPFAKEV TKRVETPDGD WKGWNWRSEG DILVNGAFFV ASGEGAEMRY EKAYSVEPKS
401: ASFITQITFH SGVLGVGGRN NNLGMWTTTG SEGTSGLDSY NDYTDEMSGA GSTNRLSFSV LVFLLSSISY LVVFTSSTQM FML
Arabidopsis Description
Pectate lyase [Source:UniProtKB/TrEMBL;Acc:Q56XU8]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.