Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 7
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G143600.1 | Wheat | extracellular | 83.3 | 85.21 |
| TraesCS1B01G161000.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 82.48 | 85.08 |
| TraesCS1D01G142400.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 82.28 | 84.52 |
| KXG38421 | Sorghum | extracellular | 79.84 | 81.33 |
| Zm00001d032806_P001 | Maize | cytosol, plastid | 68.23 | 77.55 |
| HORVU1Hr1G038220.7 | Barley | endoplasmic reticulum, extracellular | 75.56 | 76.18 |
| GSMUA_Achr4P25120_001 | Banana | extracellular | 60.49 | 66.44 |
| GSMUA_Achr1P03320_001 | Banana | plasma membrane | 64.77 | 62.23 |
| PGSC0003DMT400009869 | Potato | cytosol | 52.95 | 61.03 |
| Bra006976.1-P | Field mustard | cytosol | 54.58 | 58.64 |
| KRH19954 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 56.62 | 58.28 |
| KRH67761 | Soybean | endoplasmic reticulum, extracellular, vacuole | 55.4 | 57.87 |
| CDX73573 | Canola | extracellular | 55.6 | 57.35 |
| Solyc09g008380.2.1 | Tomato | nucleus | 56.01 | 56.94 |
| CDX78152 | Canola | extracellular | 54.99 | 56.72 |
| VIT_08s0007g04820.t01 | Wine grape | plastid | 56.42 | 56.65 |
| AT3G53190.1 | Thale cress | extracellular | 54.58 | 55.49 |
| Bra028549.1-P | Field mustard | plasma membrane | 55.19 | 55.31 |
| CDX67560 | Canola | plasma membrane | 55.19 | 55.31 |
| Os05t0293500-01 | Rice | extracellular | 39.31 | 51.74 |
| CDY13312 | Canola | plasma membrane | 53.77 | 49.25 |
| Os06t0144200-01 | Rice | extracellular, plasma membrane | 43.38 | 47.33 |
| Os02t0214400-01 | Rice | plasma membrane | 42.97 | 47.31 |
| Os06t0583900-01 | Rice | plasma membrane | 40.73 | 44.64 |
| Os06t0144900-01 | Rice | mitochondrion | 41.14 | 42.71 |
Protein Annotations
| KEGG:00040+4.2.2.2 | Gene3D:2.160.20.10 | MapMan:21.3.5.2 | InterPro:AmbAllergen | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016829 | GO:GO:0030570 | GO:GO:0045490 | GO:GO:0046872 | InterPro:IPR012334 | EnsemblPlantsGene:Os10g0457200 |
| EnsemblPlants:Os10t0457200-01 | PFAM:PF00544 | PRINTS:PR00807 | PANTHER:PTHR31683 | PANTHER:PTHR31683:SF11 | InterPro:Pec_lyase |
| InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | SMART:SM00656 | SUPFAM:SSF51126 | SignalP:SignalP-noTM | UniParc:UPI0001C7A4DC |
| SEG:seg | : | : | : | : | : |
Description
dwarf and early-senescence leaf1Pectate lyase (PEL) precursor, Maintenance of normal cell division, Induction of leaf senescence (Os10t0457200-01)
Coordinates
chr10:-:16755659..16761229
Molecular Weight (calculated)
51541.9 Da
IEP (calculated)
6.265
GRAVY (calculated)
-0.084
Length
491 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGPVESTRI TLLLVAATLL LLPPPLAASL NSSLPDPAAV VADFHSKVAT SRRRMQKADG GGGGGGGGCL TGNPIDHCWR CAGTDWRQDR QRLADCGIGF
101: GRNAMGGKGG PVYVVTDPSD GDPVNPAPGT LRYGAIQEGP LWIVFAGDMT IRLNEELLVN SYKTIDGRGA NVHVGAGGAC ITLQYVSNVI IHNIHVHDCV
201: PAGNANVRAS PTHYGWRTRS DGDGISLYSA RDVWVDHCAL SRCADGLIDA IMGSTAITVS NSYFSHHNEV MLLGHSDGYL PDSAMQVTIA FNHFGIQLVQ
301: RMPRCRRGYF HIVNNDYTAW EMYAIGGSAS PTINSQGNRY IAPADPNAKE VTKRVDTEEG QWAGWNWRTE GDMMVNGAFF VPSGEGLEAI YDKASSTDPK
401: SSALVDQLTA GAGVLGGPRD NGEAAAYAGV NYAGVGTGGG GGGGAGAGGM GYGYLGMVYG SGGNWSCRAD LTLQLTSLFL ALFALICLHP L
101: GRNAMGGKGG PVYVVTDPSD GDPVNPAPGT LRYGAIQEGP LWIVFAGDMT IRLNEELLVN SYKTIDGRGA NVHVGAGGAC ITLQYVSNVI IHNIHVHDCV
201: PAGNANVRAS PTHYGWRTRS DGDGISLYSA RDVWVDHCAL SRCADGLIDA IMGSTAITVS NSYFSHHNEV MLLGHSDGYL PDSAMQVTIA FNHFGIQLVQ
301: RMPRCRRGYF HIVNNDYTAW EMYAIGGSAS PTINSQGNRY IAPADPNAKE VTKRVDTEEG QWAGWNWRTE GDMMVNGAFF VPSGEGLEAI YDKASSTDPK
401: SSALVDQLTA GAGVLGGPRD NGEAAAYAGV NYAGVGTGGG GGGGAGAGGM GYGYLGMVYG SGGNWSCRAD LTLQLTSLFL ALFALICLHP L
001: MMLQRSCIVL FFSLFLLVPQ MVFSMLNRTL LLIPHPDPEL VAYQVQWKVN ASITRRQALD TTDQAGSTPC ITGNPIDDCW KCDPNWPNNR QGLADCGIGF
101: GQYALGGKGG QFYFVTDSSD DDAVNPKPGT LRYGVIQEEP LWIVFPSNMM IKLKQELIFN SYKTLDGRGA NVHIVGGGCI TLQYVSNIII HNIHIHHCYQ
201: SGNTNVRSSP THYGFRTKSD GDGISIFGSK DIWIDHCSLS RCKDGLIDAV MGSTGITISN NFFSHHNEVM LLGHSDHYEP DSGMQVTIAF NHFGEKLIQR
301: MPRCRRGYIH VVNNDFTQWE MYAIGGSGNP TINSQGNRYT APTNPFAKEV TKRVETPDGD WKGWNWRSEG DILVNGAFFV ASGEGAEMRY EKAYSVEPKS
401: ASFITQITFH SGVLGVGGRN NNLGMWTTTG SEGTSGLDSY NDYTDEMSGA GSTNRLSFSV LVFLLSSISY LVVFTSSTQM FML
101: GQYALGGKGG QFYFVTDSSD DDAVNPKPGT LRYGVIQEEP LWIVFPSNMM IKLKQELIFN SYKTLDGRGA NVHIVGGGCI TLQYVSNIII HNIHIHHCYQ
201: SGNTNVRSSP THYGFRTKSD GDGISIFGSK DIWIDHCSLS RCKDGLIDAV MGSTGITISN NFFSHHNEVM LLGHSDHYEP DSGMQVTIAF NHFGEKLIQR
301: MPRCRRGYIH VVNNDFTQWE MYAIGGSGNP TINSQGNRYT APTNPFAKEV TKRVETPDGD WKGWNWRSEG DILVNGAFFV ASGEGAEMRY EKAYSVEPKS
401: ASFITQITFH SGVLGVGGRN NNLGMWTTTG SEGTSGLDSY NDYTDEMSGA GSTNRLSFSV LVFLLSSISY LVVFTSSTQM FML
Arabidopsis Description
Pectate lyase [Source:UniProtKB/TrEMBL;Acc:Q56XU8]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.