Factsheet for Os05t0293500-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 6
vacuole 6
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G129200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	69.97	69.05
TraesCS6A01G139800.1	Wheat	endoplasmic reticulum, extracellular, vacuole	69.44	68.52
TraesCS6B01G168400.1	Wheat	plastid	69.17	67.89
KXG22892	Sorghum	cytosol	49.6	66.79
HORVU6Hr1G027330.1	Barley	extracellular	67.56	65.97
Os10t0457200-01	Rice	plasma membrane	51.74	39.31
Os02t0214400-01	Rice	plasma membrane	46.38	38.79
Os06t0144200-01	Rice	extracellular, plasma membrane	44.77	37.11
Os06t0144900-01	Rice	mitochondrion	46.38	36.58
Os06t0583900-01	Rice	plasma membrane	43.7	36.38

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	EntrezGene:4338309	EMBL:AK072592	InterPro:AmbAllergen
ProteinID:BAF17020.1	ProteinID:BAS93173.1	ProteinID:EEE63116.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829
GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334	EnsemblPlantsGene:Os05g0293500	EnsemblPlants:Os05t0293500-01
PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683	PANTHER:PTHR31683:SF22	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	UniProt:Q0DJF3	SMART:SM00656	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI0000E123FD
RefSeq:XP_015638870.1	SEG:seg	:	:	:	:

Description

Similar to Pectate lyase B (Fragment). (Os05t0293500-01)

Coordinates

chr5:-:12933093..12938368

Molecular Weight (calculated)

39972.1 Da

IEP (calculated)

6.427

GRAVY (calculated)

-0.120

Length

373 amino acids

Sequence
(BLAST)

001: MAAIFIFIWL FASVLSISSA SSPLLINGST ADAAPDCGTG NPIDDCWRCD PGWADNRQRL ADCAVGFGRR AVGGKGGRVY VVNDTGDDAA RPAPGTLRYG
101: LVQDEPLWIV FAGDMTISPA HELVVSSRKT VDGRGARVVV GDGGACFAVR GASDVVIHGL TIRRCRPAPK LEAGMSDGDG VHNSSDVWVD HCTVEACADG
201: LIDVVVGSTR VTLSNNLLRN HDKAILLGHN DDYTDDKAMQ VTVAFNRFGP GLVQRMPRCR FGLFHVINND YIAWQKYAIG GSASPTIISH GNRFYADMAK
301: EVTKRDDDVP ESVWHHWNWV SDGDLMLNGA FFRASGEART DNLKAPSFAR SAPSVPSMTS SAGALSCKEG SHC

Best Arabidopsis Sequence Match ( AT1G67750.1 )
(BLAST)

001: MRMTLVHLSL SLFSCLLLVL SPTFIASTPV SEPELVVQEV NEKINASRRN LGVLSCGTGN PIDDCWRCDP KWEKNRQRLA DCAIGFGKHA IGGRDGKIYV
101: VTDSSDKDVV NPKPGTLRHA VIQDEPLWII FARDMVIKLK EELIMNSFKT IDGRGASVHI AGGACITVQY VTNIIIHGVN IHDCKRKGNA YVRDSPSHYG
201: WRTASDGDAV SIFGGSHVWV DHCSLSNCAD GLIDAIHGST AITISNNYLS HHNKVMLLGH SDSYTRDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN
301: DYTHWQMYAI GGSAAPTINS QGNRFLAPND HVFKEVTKYE DAPRSKWKKW NWRSEGDLFL NGAFFTPSGG GASSSYAKAS SLSARPSSLV ASVTSNAGAL
401: FCRKGSRC

Arabidopsis Description

Probable pectate lyase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXD8]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.