Factsheet for Solyc06g071020.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400083135	Potato	extracellular	95.4	95.4
Solyc03g113150.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	73.33	73.33
VIT_17s0000g05740.t01	Wine grape	extracellular	70.11	71.1
KRH63402	Soybean	extracellular	64.83	64.83
GSMUA_Achr6P00830_001	Banana	endoplasmic reticulum, extracellular	64.6	64.3
KRH54508	Soybean	extracellular	48.05	62.76
TraesCS4A01G385700.1	Wheat	cytosol	31.26	62.1
GSMUA_Achr2P16830_001	Banana	endoplasmic reticulum, extracellular	62.07	61.64
GSMUA_Achr10P...	Banana	extracellular	53.56	59.74
Solyc03g058890.2.1	Tomato	extracellular	61.38	59.47
GSMUA_Achr10P...	Banana	cytosol	47.13	59.25
Solyc02g087670.2.1	Tomato	extracellular	60.46	58.97
Solyc01g010740.2.1	Tomato	endoplasmic reticulum, extracellular	58.62	58.09
EES06507	Sorghum	golgi, vacuole	57.93	56.63
HORVU6Hr1G038630.1	Barley	extracellular	52.64	56.54
OQU75805	Sorghum	mitochondrion	57.24	56.33
Zm00001d046389_P007	Maize	endoplasmic reticulum, extracellular	55.86	56.12
TraesCS7D01G356700.1	Wheat	extracellular	57.24	56.08
TraesCS7A01G365700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	57.24	56.08
Solyc03g111690.2.1	Tomato	nucleus	51.95	56.08
Zm00001d000216_P001	Maize	golgi, vacuole	56.32	55.94
Os06t0583900-01	Rice	plasma membrane	57.47	55.8
TraesCS7B01G261700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	56.78	55.63
Os02t0214400-01	Rice	plasma membrane	57.01	55.61
Solyc02g093580.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	51.26	55.2
HORVU7Hr1G085860.1	Barley	endoplasmic reticulum, extracellular, vacuole	56.32	55.18
EER88571	Sorghum	endoplasmic reticulum, plasma membrane	57.47	55.07
Os06t0144200-01	Rice	extracellular, plasma membrane	56.78	54.89
TraesCS7A01G086600.1	Wheat	endoplasmic reticulum, extracellular	56.32	54.69
Solyc05g014000.2.1	Tomato	extracellular, nucleus	50.11	54.36
TraesCS6D01G170500.1	Wheat	golgi	52.41	53.65
Solyc06g071840.1.1	Tomato	vacuole	43.91	53.2
TraesCS6B01G211900.1	Wheat	extracellular, golgi, vacuole	51.95	53.18
Solyc03g058910.2.1	Tomato	extracellular, golgi	47.36	51.76
Zm00001d036158_P001	Maize	endoplasmic reticulum, extracellular, vacuole	53.79	51.66
Os06t0144900-01	Rice	mitochondrion	55.86	51.37
Solyc05g007080.2.1	Tomato	extracellular	53.33	50.88
EER87830	Sorghum	endoplasmic reticulum, extracellular, vacuole	54.02	50.54
Solyc09g061890.2.1	Tomato	endoplasmic reticulum, extracellular	50.8	50.34
Zm00001d036945_P001	Maize	endoplasmic reticulum	48.05	49.76
TraesCS6A01G184500.2	Wheat	extracellular, golgi, vacuole	52.87	49.68
Solyc06g083580.2.1	Tomato	nucleus	48.97	49.08
Solyc09g091430.2.1	Tomato	nucleus	49.43	47.67
HORVU7Hr1G019500.1	Barley	mitochondrion	56.55	47.31
Solyc11g008140.1.1	Tomato	plasma membrane	47.82	46.33
Solyc09g008380.2.1	Tomato	nucleus	47.36	42.65
Solyc03g071570.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	48.97	42.26
Solyc05g055510.2.1	Tomato	plasma membrane	47.13	41.5
GSMUA_Achr7P08840_001	Banana	nucleus	63.22	41.04
Solyc02g067450.2.1	Tomato	extracellular	54.48	38.47
Solyc02g080910.2.1	Tomato	extracellular	41.38	23.72

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334	UniProt:K4C8H5
PFAM:PF00544	PFAM:PF04431	PRINTS:PR00807	PANTHER:PTHR31683	PANTHER:PTHR31683:SF7	InterPro:Pec_lyase
InterPro:Pec_lyase_N	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126	SignalP:SignalP-noTM
EnsemblPlantsGene:Solyc06g071020.2	EnsemblPlants:Solyc06g071020.2.1	UniParc:UPI0002766F09	SEG:seg	:	:

Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:K4C8H5]

Coordinates

chr6:+:43624823..43626842

Molecular Weight (calculated)

48607.6 Da

IEP (calculated)

7.871

GRAVY (calculated)

-0.412

Length

435 amino acids

Sequence
(BLAST)

001: MVTLINRSSF FVILCTLFFS IEANIGEFDE VWRTRATQAN KNAKESYNPN PEKVAANFNK HVHRSEEGSN STRRDLHKYN GPCVATNPID RCWRCDPHWA
101: KNRQKLADCV LGFGHHTTGG KGGKIYEVTD PGDTDMVNPK QGTLRHAVIQ PGPLWIIFAH HMVIKLNQEL IMTGDKTIDA RGQQVHITGG ASLMLQYINN
201: VIIHGLHIHD IKAGNGGLIR DSINHYGFRT KSDGDGISIY GSTNIWIDHV SMSNCDDGLI DAVQASTAIT ISNCHFTHHN DVMLFGASDS FKQDEILQIT
301: LAFNHFGQGL IQRMPRVRWG FVHAVNNDYT HWLMYAVGGS QQPTILSQGN RFIAPPNPNA KEVTKREYSP ESVWKNWVWR SQGDLMMNGA FFVESGDPNH
401: KFTTGPDMIH PRAGSDAGRL TRFSGSLNCI EGKPC

Best Arabidopsis Sequence Match ( AT3G01270.1 )
(BLAST)

001: METARLFKLV CVICIASLIP TIRANVADET DEYWVNKANE ARKHTLMAYH PDPYEIVDHF HERHYDNSTD VEGTEEEKAV ASEEEDVIEM ISSPTNSTRR
101: SLTGRGKGKG KGKWSKLTGP CTASNPIDKC WRCQPDWARR RKKLVHCVRG FGYRTTGGKR GRIYVVTSPR DDDMVNPRPG TLRHAVIQKE PLWIVFKHDM
201: SIRLSQELMI TSDKTIDARG ANVHIAYGAG ITMQYVHNII IHGLHVHHIV KSSGGLIRDS INHFGHRGEA DGDGISIFGA TNIWLDHISM SKCQDGLIDA
301: IMGSTAITIS NSHFTHHNDV MLLGAQNNNM DDKKMQVTVA YNHFGKGLVQ RMPRVRWGFV HVVNNDYTHW ELYAIGGSQG PTILSHGNRF IAPPHKQHYR
401: EVTKRDYASE SEWKNWNWRS EKDVFMNNAY FRQSGNPHFK CSHSRQQMIK PKNGMAVSKL TKYAGALDCR VGKAC

Arabidopsis Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:Q08A70]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.