Factsheet for Solyc11g008140.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 9
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	extracellular, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079776	Potato	plasma membrane	90.87	83.27
HORVU5Hr1G005000.2	Barley	cytosol	51.67	68.04
VIT_13s0019g04910.t01	Wine grape	extracellular	71.71	64.92
Solyc05g055510.2.1	Tomato	plasma membrane	71.27	64.78
CDX70244	Canola	vacuole	62.36	63.49
Solyc03g071570.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	70.38	62.7
KRG90767	Soybean	extracellular	68.82	61.55
Solyc03g111690.2.1	Tomato	nucleus	55.23	61.54
Solyc05g014000.2.1	Tomato	extracellular, nucleus	54.79	61.35
Solyc06g071840.1.1	Tomato	vacuole	48.78	61.0
Solyc02g093580.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	54.57	60.64
CDY07515	Canola	endoplasmic reticulum, extracellular, vacuole	66.15	60.37
KRH35994	Soybean	extracellular	67.71	60.32
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	65.92	60.29
CDX67615	Canola	endoplasmic reticulum, extracellular, vacuole	65.7	60.08
Solyc09g008380.2.1	Tomato	nucleus	64.37	59.83
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	64.59	59.18
CDY56964	Canola	endoplasmic reticulum, extracellular, vacuole	64.59	58.94
AT3G54920.1	Thale cress	extracellular	64.81	58.08
AT5G04310.1	Thale cress	plasma membrane	66.37	57.53
CDY11284	Canola	extracellular, golgi	64.37	56.67
CDX73426	Canola	endoplasmic reticulum, extracellular, vacuole	64.81	56.29
Solyc09g061890.2.1	Tomato	endoplasmic reticulum, extracellular	55.01	56.26
Bra005799.1-P	Field mustard	extracellular, golgi	63.92	56.05
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	65.03	55.73
CDY58428	Canola	endoplasmic reticulum, golgi, plastid	63.7	55.53
Solyc06g083580.2.1	Tomato	nucleus	53.45	55.3
CDY41382	Canola	endoplasmic reticulum, golgi	64.37	54.84
Solyc09g091430.2.1	Tomato	nucleus	54.79	54.55
Solyc01g010740.2.1	Tomato	endoplasmic reticulum, extracellular	46.77	47.84
Solyc03g113150.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	46.33	47.82
Solyc06g071020.2.1	Tomato	extracellular	46.33	47.82
Solyc03g058890.2.1	Tomato	extracellular	47.66	47.66
Solyc03g058910.2.1	Tomato	extracellular, golgi	40.76	45.98
Solyc02g087670.2.1	Tomato	extracellular	45.43	45.74
Solyc05g007080.2.1	Tomato	extracellular	45.66	44.96
Solyc02g067450.2.1	Tomato	extracellular	42.32	30.84
Solyc02g080910.2.1	Tomato	extracellular	44.77	26.48

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334	UniProt:K4D575
PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683	PANTHER:PTHR31683:SF11	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc11g008140.1	EnsemblPlants:Solyc11g008140.1.1
TMHMM:TMhelix	UniParc:UPI000276A734	SEG:seg	:	:	:

Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:K4D575]

Coordinates

chr11:+:2407048..2410940

Molecular Weight (calculated)

49805.8 Da

IEP (calculated)

6.070

GRAVY (calculated)

-0.163

Length

449 amino acids

Sequence
(BLAST)

001: MFSLICILLF CLLVSFFPQI IASFNLTLPH QHPYPEVVVQ EVQRKVNESI SRRQLWNTTM NAITTQCETG NPIDDCWRCD PNWSKNRQRL ADCAIGFGQN
101: AIGGKNGKYY VVSDSSDLDT VNPTQGTLRH AVIQEEPLWI IFSGDMFIKL KHELIVNSYK TIDGRGAKVH ITGNGCITLQ YISNVIIHNI HIYNCLPSGN
201: TDIRSTPTHV GHRGRSDGDG ISIFSSRNIW IDHCALSHCT DGLIDAIMGS TGITISNSYF SHHDEVMLLG HDDSYSPDAG MQVTIAFNHF GVGLVQRMPR
301: CRRGYIHVVN NDFTEWQMYA IGGSANPTIN SQGNRYTAPV DANAKEVTKR VETDEGEWSG WNWRTDGDIM VNGAFFVPSG EGLSNQYAKA SSVEPKSAAI
401: IDQLTLNAGV FGATSESVDQ IEDSVNSLKA KEYTLSISIF LVYFLFSSV

Best Arabidopsis Sequence Match ( AT5G04310.3 )
(BLAST)

001: MVAHERRIHN LQKPTCICII WFCLLVSLSH HGRASSTSAS IFNLSLPHQH PFPEHVVLNV QRKLNDSLSR RQLLTYQQDD GTTASSPIPS CITGNPIDDC
101: WRCDPNWSAN RQRLADCSIG FGQGTLGGKG GQFYLVTDSS DNDAANPIPG TLRHAVIQPE PLWIIFSSDM GIKLKHELII GSYKTIDGRG TNIQITGHGC
201: LTIQQVSHVI IHNVHIHHCK PSGNTLVASS PTHVGFRGVS DGDGISVSAS HHIWVDHCSL GYCADGLIDV ILASTAVTIS NNYFSHHDEV MLLGHDDRYT
301: ADKGMQVTIA FNHFGEGLVQ RMPRCRHGYI HVVNNDFTAW EMYAIGGSAS PTINSQGNRY TAPIDPNAKE VTKRVDSNEK HWSGWNWRTE GDVMVNGAFF
401: VPSGDGVSPA YARATSVQPK AAAIIDQLTV NAGVFGDPRY YYQIIYSIAS STQTSIYFIT FIFASILLFD SFNYF

Arabidopsis Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:F4JW80]
SUBAcon: [mitochondrion,endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.