Factsheet for PGSC0003DMT400079776

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 8
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g008140.1.1	Tomato	plasma membrane	83.27	90.87
PGSC0003DMT400011046	Potato	mitochondrion	41.63	70.1
VIT_13s0019g04910.t01	Wine grape	extracellular	70.82	69.96
HORVU5Hr1G005000.2	Barley	cytosol	47.35	68.04
KRG90767	Soybean	extracellular	68.37	66.73
KRH35994	Soybean	extracellular	67.55	65.67
CDY07515	Canola	endoplasmic reticulum, extracellular, vacuole	65.31	65.04
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	64.69	64.56
CDX67615	Canola	endoplasmic reticulum, extracellular, vacuole	64.29	64.15
PGSC0003DMT400009869	Potato	cytosol	55.51	63.85
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	63.06	63.06
CDY56964	Canola	endoplasmic reticulum, extracellular, vacuole	63.27	63.01
CDX70244	Canola	vacuole	56.53	62.81
AT3G54920.1	Thale cress	extracellular	63.88	62.48
PGSC0003DMT400069632	Potato	vacuole	51.22	61.98
PGSC0003DMT400039385	Potato	extracellular	50.82	61.79
PGSC0003DMT400027955	Potato	extracellular	49.59	60.6
AT5G04310.1	Thale cress	plasma membrane	63.88	60.42
CDX73426	Canola	endoplasmic reticulum, extracellular, vacuole	63.47	60.15
PGSC0003DMT400032910	Potato	endoplasmic reticulum, extracellular, vacuole	49.39	60.05
CDY11284	Canola	extracellular, golgi	62.04	59.61
Bra005799.1-P	Field mustard	extracellular, golgi	61.63	58.98
CDY58428	Canola	endoplasmic reticulum, golgi, plastid	61.43	58.45
PGSC0003DMT400060374	Potato	extracellular, plasma membrane, vacuole	67.96	58.32
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	62.24	58.21
CDY41382	Canola	endoplasmic reticulum, golgi	61.84	57.5
PGSC0003DMT400040893	Potato	endoplasmic reticulum, vacuole	50.41	56.26
PGSC0003DMT400076251	Potato	extracellular	49.59	54.24
PGSC0003DMT400051938	Potato	endoplasmic reticulum, extracellular	49.18	52.39
PGSC0003DMT400042395	Potato	extracellular	40.61	52.23
PGSC0003DMT400042396	Potato	endoplasmic reticulum, extracellular, vacuole	41.02	50.63
PGSC0003DMT400083135	Potato	extracellular	42.86	48.28
PGSC0003DMT400002241	Potato	extracellular	42.86	47.84
PGSC0003DMT400017863	Potato	extracellular	42.45	47.06
PGSC0003DMT400014086	Potato	extracellular	42.65	46.76
PGSC0003DMT400046723	Potato	endoplasmic reticulum, golgi, vacuole	41.22	46.44
PGSC0003DMT400017862	Potato	endoplasmic reticulum, extracellular	37.35	46.1
PGSC0003DMT400003310	Potato	extracellular	41.02	45.07
PGSC0003DMT400014085	Potato	extracellular, golgi	36.33	44.72
PGSC0003DMT400045436	Potato	extracellular	41.43	44.23

Protein Annotations

KEGG:00040+4.2.2.2	EntrezGene:102578838	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016829	GO:GO:0030570
GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334	UniProt:M1D2F0	PFAM:PF00544	EnsemblPlantsGene:PGSC0003DMG400031065
PGSC:PGSC0003DMG400031065	EnsemblPlants:PGSC0003DMT400079776	PRINTS:PR00807	PANTHER:PTHR31683	PANTHER:PTHR31683:SF11	InterPro:Pec_lyase
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI000295942A	RefSeq:XP_006361698.1	SEG:seg	:	:	:

Description

Pectate lyase [Source:PGSC_GENE;Acc:PGSC0003DMG400031065]

Coordinates

chr11:-:3891367..3898425

Molecular Weight (calculated)

53708.7 Da

IEP (calculated)

6.399

GRAVY (calculated)

-0.125

Length

490 amino acids

Sequence
(BLAST)

001: MFSVICILLF CLLISFFPQI IVSFNLTLPH QHPYPDAVVQ EVQRKVNESI SRRQLWNTTM NAITTQCETG NPIDDCWRCD PNWSKNRQRL ADCAIGFGQN
101: AIGGKNGKYY VVSDSSDLDT VNPTPGTLRY AVIQEEPLWI IFSGDMFIKL KHELIVNSYK TIDGRGAKVH ITGNGCITLQ YISNVIIHNI HIYNCLPSGN
201: TDIRSTPTHV GHRGRSDGDG ISIFASRNIW IDHCALSHCT DGLIDAIMGS TGITISNSYF SHHDEVMLLG HDDKYLPDAG MQVTIAFNHF GVGLVQRMPR
301: CRRGYIHVVN NDFTEWQMYA IGGSANPTIN SQGNRYTAPL DANAKEVTKR VETDEGEWSG WNWRTNGDVM VNGAFFVPSG EEGLGNQYAK ASSVEPKSAA
401: IIDQLTLNAG VFGAPRDKSI SISYGGGTTT GASGSGGGGS TGAGDDSDFF GMMFGSGAPQ KISSTTYYTI LLSHLIILFL YTNQLFLILL

Best Arabidopsis Sequence Match ( AT5G04310.3 )
(BLAST)

001: MVAHERRIHN LQKPTCICII WFCLLVSLSH HGRASSTSAS IFNLSLPHQH PFPEHVVLNV QRKLNDSLSR RQLLTYQQDD GTTASSPIPS CITGNPIDDC
101: WRCDPNWSAN RQRLADCSIG FGQGTLGGKG GQFYLVTDSS DNDAANPIPG TLRHAVIQPE PLWIIFSSDM GIKLKHELII GSYKTIDGRG TNIQITGHGC
201: LTIQQVSHVI IHNVHIHHCK PSGNTLVASS PTHVGFRGVS DGDGISVSAS HHIWVDHCSL GYCADGLIDV ILASTAVTIS NNYFSHHDEV MLLGHDDRYT
301: ADKGMQVTIA FNHFGEGLVQ RMPRCRHGYI HVVNNDFTAW EMYAIGGSAS PTINSQGNRY TAPIDPNAKE VTKRVDSNEK HWSGWNWRTE GDVMVNGAFF
401: VPSGDGVSPA YARATSVQPK AAAIIDQLTV NAGVFGDPRY YYQIIYSIAS STQTSIYFIT FIFASILLFD SFNYF

Arabidopsis Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:F4JW80]
SUBAcon: [mitochondrion,endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.