Factsheet for Bra003200.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 5
plasma membrane 6
golgi 5
plastid 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67615	Canola	endoplasmic reticulum, extracellular, vacuole	98.17	98.17
CDY07515	Canola	endoplasmic reticulum, extracellular, vacuole	97.76	97.56
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	84.93	85.1
AT3G54920.1	Thale cress	extracellular	82.48	80.84
Solyc11g008140.1.1	Tomato	plasma membrane	60.29	65.92
PGSC0003DMT400079776	Potato	plasma membrane	64.56	64.69
HORVU5Hr1G005000.2	Barley	cytosol	44.81	64.52
VIT_13s0019g04910.t01	Wine grape	extracellular	62.93	62.3
KRG90767	Soybean	extracellular	62.73	61.35
PGSC0003DMT400011046	Potato	mitochondrion	36.25	61.17
KRH35994	Soybean	extracellular	61.71	60.12
Bra013833.1-P	Field mustard	endoplasmic reticulum, vacuole	49.08	59.36
Bra006976.1-P	Field mustard	cytosol	55.19	59.3
Solyc03g071570.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	60.29	58.73
Solyc05g055510.2.1	Tomato	plasma membrane	59.06	58.7
Bra010482.1-P	Field mustard	endoplasmic reticulum, extracellular	48.47	58.62
Bra004254.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	48.47	58.62
Bra005799.1-P	Field mustard	extracellular, golgi	61.1	58.59
Bra004073.1-P	Field mustard	extracellular	48.47	58.48
Bra036155.1-P	Field mustard	extracellular	49.29	57.89
Bra033980.1-P	Field mustard	extracellular	47.86	57.88
Bra020672.1-P	Field mustard	extracellular	48.88	57.55
Bra035852.1-P	Field mustard	extracellular	47.86	57.32
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	60.9	57.06
Bra038614.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	47.86	56.9
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	48.88	56.74
Bra028549.1-P	Field mustard	plasma membrane	56.42	56.53
Bra032696.1-P	Field mustard	endoplasmic reticulum, extracellular	47.25	56.17
Bra032494.1-P	Field mustard	extracellular	49.29	56.15
Bra015341.1-P	Field mustard	extracellular	49.29	56.15
Bra029614.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	45.62	55.31
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	48.47	55.22
Bra025274.1-P	Field mustard	extracellular	45.62	54.37
Bra019209.1-P	Field mustard	endoplasmic reticulum, extracellular	46.03	54.33
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	49.9	54.32
Bra039081.1-P	Field mustard	extracellular, plastid	45.21	53.88
Bra019729.1-P	Field mustard	extracellular	39.92	52.97
Bra019730.1-P	Field mustard	extracellular	40.94	52.21
Bra015000.1-P	Field mustard	golgi, plasma membrane	47.45	52.13
Bra033008.1-P	Field mustard	extracellular	41.96	51.76
PGSC0003DMT400060374	Potato	extracellular, plasma membrane, vacuole	59.27	50.96
Bra013585.1-P	Field mustard	extracellular	40.53	50.64
Bra020859.1-P	Field mustard	extracellular	40.33	50.13
Bra035588.1-P	Field mustard	extracellular	39.51	50.0
Bra015070.1-P	Field mustard	endoplasmic reticulum, extracellular	48.88	48.78
Bra016700.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	42.16	45.2
Bra026832.1-P	Field mustard	extracellular	41.14	44.69
Bra017412.1-P	Field mustard	extracellular	41.34	44.23
Bra026221.1-P	Field mustard	endoplasmic reticulum	40.94	43.89
Bra012756.1-P	Field mustard	extracellular	34.42	43.44
Bra006279.1-P	Field mustard	endoplasmic reticulum, extracellular	41.96	43.37
Bra024811.1-P	Field mustard	extracellular	40.12	42.92
Bra026583.1-P	Field mustard	endoplasmic reticulum, plasma membrane	39.51	42.45
Bra001011.1-P	Field mustard	endoplasmic reticulum, extracellular	39.71	41.4
Bra023504.1-P	Field mustard	extracellular	40.53	41.37
Bra008721.1-P	Field mustard	endoplasmic reticulum, extracellular	40.94	40.28

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	EnsemblPlantsGene:Bra003200	EnsemblPlants:Bra003200.1
EnsemblPlants:Bra003200.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334	UniProt:M4CG67
PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683	PANTHER:PTHR31683:SF11	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002541445
SEG:seg	:	:	:	:	:

Description

AT3G54920 (E=2e-184) PMR6 | PMR6 (powdery mildew resistant 6); lyase/ pectate lyase

Coordinates

chrA07:+:11825431..11829428

Molecular Weight (calculated)

52813.1 Da

IEP (calculated)

6.854

GRAVY (calculated)

-0.199

Length

491 amino acids

Sequence
(BLAST)

001: MHPPHFSISI LLLCLFFFTL LEATKPLNLT LPHQHPSPDS VALHVTSTIN ASLSRRQLTS SSSSTCGTGN PIDDCWRCDS SDWSSNRQRL ADCSIGFGSG
101: TLGGKNGRIY VVTDSSDNNP ANPTPGTLRH AVIQEEPLWI VFSSNMFIRL KQELIINSYK TIDGRGAAVH VTGNGCLTIQ YVQHVIIHNI HIYDCKPSGG
201: AVVAASPTKV GRRGRSDGDG ISIFGSQKIW VDHCSLSHCT DGLIDVVLGS TAITISNNYF THHDEVMLLG HDDKYVLDTG MQVTIAFNHF GQGLVQRMPR
301: CRRGYIHVVN NDFTSWKMYA IGGSGNPTIN SQGNRYSAPS DPSAKEVTKR VDSTDDGEWA NWNWRTEGDL MENGAFFVAS GEGVSTLYSK ASSVEPKAAA
401: LVDQLTQNAG VFGGPRDDQG QSGDSYSGYG GGGAGGTGAI GGTSRGSSSN SDNNFFGMIF GNNAPPRPRL TLLLLSLLMI CVLSTSTLLL W

Best Arabidopsis Sequence Match ( AT3G54920.1 )
(BLAST)

001: MLLQNFSNTI FLLCLFFTLL SATKPLNLTL PHQHPSPDSV ALHVIRSVNE SLARRQLSSP SSSSSSSSSS SSSSCRTGNP IDDCWRCSDA DWSTNRQRLA
101: DCSIGFGHGT LGGKNGKIYV VTDSSDNNPT NPTPGTLRYG VIQEEPLWIV FSSNMLIRLK QELIINSYKT LDGRGSAVHI TGNGCLTLQY VQHIIIHNLH
201: IYDCKPSAGF EKRGRSDGDG ISIFGSQKIW VDHCSMSHCT DGLIDAVMGS TAITISNNYF THHDEVMLLG HDDNYAPDTG MQVTIAFNHF GQGLVQRMPR
301: CRRGYIHVVN NDFTEWKMYA IGGSGNPTIN SQGNRYSAPS DPSAKEVTKR VDSKDDGEWS NWNWRTEGDL MENGAFFVAS GEGMSSMYSK ASSVDPKAAS
401: LVDQLTRNAG VFGGPRDDQG QSGNSYSPYG GDGGGGGSSG GSSGGGMDVM GGTTRGSSSS SGDDSNVFQM IFGSDAPSRP RLTLLFSLLM ISVLSLSTLL
501: L

Arabidopsis Description

PMR6Probable pectate lyase 13 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z04]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.