Factsheet for Bra015070.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
nucleus 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77400	Canola	endoplasmic reticulum, extracellular	99.8	99.8
AT3G24670.1	Thale cress	endoplasmic reticulum, extracellular	80.08	89.55
Bra032696.1-P	Field mustard	endoplasmic reticulum, extracellular	69.31	82.57
Bra029614.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	65.65	79.75
Bra020672.1-P	Field mustard	extracellular	66.46	78.42
Bra036155.1-P	Field mustard	extracellular	66.06	77.75
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	64.23	73.32
Bra032494.1-P	Field mustard	extracellular	64.23	73.32
Bra015341.1-P	Field mustard	extracellular	64.02	73.09
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	61.59	71.63
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	64.84	70.73
Bra033980.1-P	Field mustard	extracellular	57.93	70.2
Bra013833.1-P	Field mustard	endoplasmic reticulum, vacuole	57.52	69.7
Bra004073.1-P	Field mustard	extracellular	57.32	69.29
Bra004254.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	57.11	69.21
Bra010482.1-P	Field mustard	endoplasmic reticulum, extracellular	56.91	68.97
Bra038614.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	56.71	67.55
Bra035852.1-P	Field mustard	extracellular	56.1	67.32
Bra015000.1-P	Field mustard	golgi, plasma membrane	57.93	63.76
Bra019209.1-P	Field mustard	endoplasmic reticulum, extracellular	53.86	63.7
Bra025274.1-P	Field mustard	extracellular	52.24	62.38
Bra039081.1-P	Field mustard	extracellular, plastid	51.83	61.89
Bra033008.1-P	Field mustard	extracellular	48.98	60.55
Bra019730.1-P	Field mustard	extracellular	42.68	54.55
Bra035588.1-P	Field mustard	extracellular	42.89	54.38
Bra019729.1-P	Field mustard	extracellular	39.84	52.97
Bra006976.1-P	Field mustard	cytosol	48.37	52.08
Bra028549.1-P	Field mustard	plasma membrane	50.0	50.2
Bra020859.1-P	Field mustard	extracellular	39.63	49.37
Bra013585.1-P	Field mustard	extracellular	39.43	49.36
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	48.78	48.88
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	47.56	47.76
Bra006279.1-P	Field mustard	endoplasmic reticulum, extracellular	45.33	46.95
Bra017412.1-P	Field mustard	extracellular	43.7	46.84
Bra023504.1-P	Field mustard	extracellular	45.33	46.36
Bra026832.1-P	Field mustard	extracellular	42.48	46.24
Bra026221.1-P	Field mustard	endoplasmic reticulum	42.89	46.07
Bra012756.1-P	Field mustard	extracellular	36.38	46.02
Bra024811.1-P	Field mustard	extracellular	42.89	45.97
Bra005799.1-P	Field mustard	extracellular, golgi	47.76	45.9
Bra026583.1-P	Field mustard	endoplasmic reticulum, plasma membrane	42.48	45.73
Bra001011.1-P	Field mustard	endoplasmic reticulum, extracellular	43.7	45.65
Bra016700.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	42.48	45.63
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	47.56	44.66
Bra008721.1-P	Field mustard	endoplasmic reticulum, extracellular	44.51	43.89

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	EnsemblPlantsGene:Bra015070	EnsemblPlants:Bra015070.1
EnsemblPlants:Bra015070.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490
GO:GO:0046872	InterPro:IPR012334	UniProt:M4DEZ8	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF34	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002540C71	SEG:seg	:	:

Description

AT3G24670 (E=1e-235) | pectate lyase family protein

Coordinates

chrA07:+:3785863..3791255

Molecular Weight (calculated)

54664.7 Da

IEP (calculated)

8.270

GRAVY (calculated)

-0.268

Length

492 amino acids

Sequence
(BLAST)

001: MAVSRNLLAL SASLLVLAFF VCVNASTRAH ETEELKSQSL TNSSTADNLS DSAWNEHAVE NPEEVAALVD MTIRNSTERR KLGFFSCATG NPIDDCWRCD
101: RNWHLRRKRL ANCAIGFGRN AVGGRDGRYY VVTDPSDNDV INPRPGTLRH AVIQDRPLWI VFKRDMVIIL KQELIMNSFK TIDGRGVNVA IAGGACITIQ
201: YVTNIIIHGI NIHDCRRTGN AMVRSSPSHY GWRTMADGDA ISIFGSSHIW IDHNSLSNCA DGLIDAIMGS TAITISNNYL THHNEVMLMG HSDSYTRDKV
301: MQVTIAYNHF GEGLIQRMPR CRHGYFHVVN NDYTHWVMYA IGGSANPTIN SQGNRFLAPA NPFAKEVTKR VGSWQGEWKQ WNWRSQGDLM LNGAYFTRSG
401: AATPASYARA SSLGAKPSSV VSMLTYSSGA LKCRIGFSDL EDFWDNLPVS RLKYNALDDF PGSLPDDFHL SQGARNTRAS QSPLYSEIKA LI

Best Arabidopsis Sequence Match ( AT3G24670.1 )
(BLAST)

001: MVIFSRSFLA LSTTLIILAL CINSSTMAQE TEDLNSHSSS NSSTANKLPN DDGAWNEHAV KNPEEVAAMV DMKIKNSTER RRLGFFSCAT GNPIDDCWRC
101: DRNWHLRRKR LANCAIGFGR NAIGGRDGRY YVVTDPSDHD AVNPRPGTLR HAVIQDRPLW IVFKRDMVIT LTQELIMNSF KTIDGRGVNV AIAGGACITI
201: QYVTNIIIHG INVHDCRRTG NAMVRSSPSH YGWRTMADGD AISIFGSSHI WIDHNSLSNC ADGLIDAIMG STAITISNNY MTHHNEVMLM GHSDSYTRDK
301: LMQVTIAYNH FGEGLIQRMP RCRHGYFHVV NNDYTHWVMY AIGGSANPTI NSQGNRFLAP GNPFAKEVTK RVGSWQGEWK QWNWRSQGDL MLNGAYFTKS
401: GAAAPASYAR ASSLGAKPAS VVSMLTYSSG ALKCRIGMRC

Arabidopsis Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:A0A178VLR8]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.