Factsheet for Bra017412.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 6
nucleus 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular, golgi, nucleus, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04133	Canola	extracellular	99.78	99.78
Bra024811.1-P	Field mustard	extracellular	85.4	85.4
AT2G02720.1	Thale cress	extracellular, vacuole	80.83	81.54
Bra026583.1-P	Field mustard	endoplasmic reticulum, plasma membrane	80.61	80.96
Bra026832.1-P	Field mustard	extracellular	72.33	73.45
Bra016700.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	72.77	72.93
Bra026221.1-P	Field mustard	endoplasmic reticulum	71.68	71.83
TraesCS4A01G385700.1	Wheat	cytosol	29.41	61.64
VIT_14s0108g00030.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	57.3	59.91
VIT_01s0026g01670.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	56.86	58.92
GSMUA_Achr2P16830_001	Banana	endoplasmic reticulum, extracellular	55.56	58.22
KRH45851	Soybean	extracellular	56.86	57.87
GSMUA_Achr6P00830_001	Banana	endoplasmic reticulum, extracellular	54.47	57.21
KRH74782	Soybean	extracellular	55.34	56.7
KRH69345	Soybean	extracellular	54.9	56.38
GSMUA_Achr10P...	Banana	cytosol	42.27	56.07
GSMUA_Achr10P...	Banana	extracellular	47.49	55.9
PGSC0003DMT400017863	Potato	extracellular	53.81	55.88
VIT_01s0026g01680.t01	Wine grape	endoplasmic reticulum, extracellular	53.59	55.53
PGSC0003DMT400014086	Potato	extracellular	54.03	55.48
Solyc03g058890.2.1	Tomato	extracellular	54.25	55.46
PGSC0003DMT400003310	Potato	extracellular	53.38	54.93
Solyc02g087670.2.1	Tomato	extracellular	53.38	54.93
Zm00001d046389_P007	Maize	endoplasmic reticulum, extracellular	51.42	54.5
PGSC0003DMT400017862	Potato	endoplasmic reticulum, extracellular	46.62	53.9
Os06t0144200-01	Rice	extracellular, plasma membrane	52.51	53.56
Os06t0583900-01	Rice	plasma membrane	52.07	53.35
Zm00001d000216_P001	Maize	golgi, vacuole	50.76	53.2
TraesCS7A01G086600.1	Wheat	endoplasmic reticulum, extracellular	51.85	53.12
EER88571	Sorghum	endoplasmic reticulum, plasma membrane	52.29	52.86
Bra013833.1-P	Field mustard	endoplasmic reticulum, vacuole	46.62	52.71
EES06507	Sorghum	golgi, vacuole	50.76	52.36
Bra006279.1-P	Field mustard	endoplasmic reticulum, extracellular	54.03	52.21
OQU75805	Sorghum	mitochondrion	50.11	52.04
TraesCS7D01G356700.1	Wheat	extracellular	50.33	52.03
Bra004254.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	45.97	51.97
HORVU6Hr1G038630.1	Barley	extracellular	45.75	51.85
Bra032696.1-P	Field mustard	endoplasmic reticulum, extracellular	46.62	51.82
TraesCS7A01G365700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	50.11	51.8
Bra010482.1-P	Field mustard	endoplasmic reticulum, extracellular	45.75	51.72
Bra004073.1-P	Field mustard	extracellular	45.75	51.6
Bra035852.1-P	Field mustard	extracellular	45.97	51.46
Bra001011.1-P	Field mustard	endoplasmic reticulum, extracellular	52.72	51.38
TraesCS7B01G261700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	49.67	51.35
Bra033980.1-P	Field mustard	extracellular	45.32	51.23
Bra039081.1-P	Field mustard	extracellular, plastid	45.97	51.21
HORVU7Hr1G085860.1	Barley	endoplasmic reticulum, extracellular, vacuole	49.46	51.13
Solyc03g058910.2.1	Tomato	extracellular, golgi	44.23	51.01
Bra038614.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	45.75	50.85
Os06t0144900-01	Rice	mitochondrion	52.29	50.74
Bra023504.1-P	Field mustard	extracellular	53.16	50.73
Os02t0214400-01	Rice	plasma membrane	49.24	50.67
PGSC0003DMT400014085	Potato	extracellular, golgi	43.79	50.5
Bra032494.1-P	Field mustard	extracellular	47.28	50.35
EER87830	Sorghum	endoplasmic reticulum, extracellular, vacuole	50.98	50.32
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	46.19	50.12
TraesCS6D01G170500.1	Wheat	golgi	46.41	50.12
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	47.06	50.12
Zm00001d036158_P001	Maize	endoplasmic reticulum, extracellular, vacuole	49.46	50.11
Bra015341.1-P	Field mustard	extracellular	46.84	49.88
Bra020672.1-P	Field mustard	extracellular	45.32	49.88
TraesCS6B01G211900.1	Wheat	extracellular, golgi, vacuole	45.97	49.65
Bra036155.1-P	Field mustard	extracellular	45.1	49.52
Bra025274.1-P	Field mustard	extracellular	44.44	49.51
Bra008721.1-P	Field mustard	endoplasmic reticulum, extracellular	53.81	49.5
Zm00001d036945_P001	Maize	endoplasmic reticulum	45.1	49.29
Bra029614.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	43.14	48.89
Bra033008.1-P	Field mustard	extracellular	41.83	48.24
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	47.28	48.12
Bra019209.1-P	Field mustard	endoplasmic reticulum, extracellular	43.14	47.6
Bra019729.1-P	Field mustard	extracellular	38.34	47.57
Bra020859.1-P	Field mustard	extracellular	40.74	47.34
Bra013585.1-P	Field mustard	extracellular	40.3	47.07
Bra019730.1-P	Field mustard	extracellular	39.43	47.01
Bra035588.1-P	Field mustard	extracellular	39.65	46.91
Bra015000.1-P	Field mustard	golgi, plasma membrane	44.88	46.09
HORVU7Hr1G019500.1	Barley	mitochondrion	52.07	45.96
TraesCS6A01G184500.2	Wheat	extracellular, golgi, vacuole	46.19	45.79
Bra015070.1-P	Field mustard	endoplasmic reticulum, extracellular	46.84	43.7
Bra006976.1-P	Field mustard	cytosol	43.36	43.54
Bra012756.1-P	Field mustard	extracellular	35.29	41.65
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	44.23	41.43
Bra028549.1-P	Field mustard	plasma membrane	44.23	41.43
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	44.23	41.34
Solyc02g067450.2.1	Tomato	extracellular	50.76	37.82
GSMUA_Achr7P08840_001	Banana	nucleus	54.47	37.31
Bra005799.1-P	Field mustard	extracellular, golgi	41.61	37.3
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	41.39	36.26
CDY04136	Canola	mitochondrion, nucleus	0.44	1.32

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	EnsemblPlantsGene:Bra017412	EnsemblPlants:Bra017412.1
EnsemblPlants:Bra017412.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490
GO:GO:0046872	InterPro:IPR012334	UniProt:M4DLN1	PFAM:PF00544	PFAM:PF04431	PRINTS:PR00807
PANTHER:PTHR31683	PANTHER:PTHR31683:SF14	InterPro:Pec_lyase	InterPro:Pec_lyase_N	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
SMART:SM00656	SUPFAM:SSF51126	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00025422C0	SEG:seg

Description

AT2G02720 (E=1e-215) | pectate lyase family protein

Coordinates

chrA09:-:15093402..15095110

Molecular Weight (calculated)

51358.4 Da

IEP (calculated)

9.999

GRAVY (calculated)

-0.437

Length

459 amino acids

Sequence
(BLAST)

001: MAVAYLNLGS HVFAFLSLCL AVVAPSIQAH VAVFDEYWTQ RQAAALRQTI ESYDPNPFNV TDHLNYHAAL AMETTGADNG TRRELGQVGG GRKTKRRGGR
101: YHSLNAIDKC WRGHRNWHKN RKKLADCVLG FGRKTTGGKK GPMYVVTDAS DDDLMNPKPG TLRYAVTRDR PLWIIFGRSM IIKLQQELII NSDKTIDGRG
201: ANIHITGGAG LTLQFVKNVI IHNIHIKTIV PGNGGMIRDS EHHFGHRTTS DGDGINIFGS TNVWIDHVSM TNCTDGMIDV IMGSTAITIS NCHLTDHNEV
301: MLFGAREEDV VDKKMQITVA FNHFGKRLVQ RMPRARFGLV HVVNNDYTHW EMYAIGGNMN PTIISQGNRF IAPPKENSKQ VTKREYAKYS EWKSWNWQSE
401: RDYFLNGAYF VKSGRANAWS PAPENPIPRH FAIQPQPGTG VRRLTKDAGT LGCRPGKSC

Best Arabidopsis Sequence Match ( AT2G02720.1 )
(BLAST)

001: MVNLGSYVFV FVALSLTVVV PSVQAHIAEY DEYWTQRQTN ALRETLESYD PNPENVTDHF NYHAALAMET TGIVNETRRD LRQVGRGKKT TRRGGRFESL
101: NAIDKCWRGD KNWDKNRKKL ADCVLGFGRK TTGGKNGPIY VVTDPSDNDL LKPKPGTIRH AVTRDRPLWI IFARSMIIKL QQELIITNDK TIDGRGAKIY
201: ITGGAGLTLQ FVRNVIIHNI HIKQIKRGAG GLIIDSEQHF GLRTVSDGDG INIFGATNVW IDHVSMTDCS DGMIDAIMGS TAITISNSHF TDHDEVMLFG
301: GTNKDVIDKK MQITVAFNHF GKRLKQRMPR VRFGLVHVVN NDYTHWEMYA IGGNMNPTII SQGNRFIAPP IEDSKQVTKR EYTPYPEWKS WNWQSEKDYF
401: LNGAYFVQSG KANAWSATPK NPIPRKFAIR PQPGTKVRRL TKDAGTLGCK PGKSC

Arabidopsis Description

Probable pectate lyase 6 [Source:UniProtKB/Swiss-Prot;Acc:O64510]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.