Factsheet for Bra020859.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76388	Canola	extracellular	100.0	96.81
Bra013585.1-P	Field mustard	extracellular	91.39	91.86
AT4G22080.1	Thale cress	extracellular	90.89	91.12
AT4G22090.1	Thale cress	extracellular	87.09	87.31
Bra019730.1-P	Field mustard	extracellular	64.81	66.49
PGSC0003DMT400042396	Potato	endoplasmic reticulum, extracellular, vacuole	62.53	62.22
Bra019729.1-P	Field mustard	extracellular	58.23	62.16
Bra012756.1-P	Field mustard	extracellular	55.19	56.04
Bra013833.1-P	Field mustard	endoplasmic reticulum, vacuole	51.9	50.49
Bra010482.1-P	Field mustard	endoplasmic reticulum, extracellular	51.39	50.0
Bra004254.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	51.39	50.0
Bra033980.1-P	Field mustard	extracellular	51.39	50.0
Bra004073.1-P	Field mustard	extracellular	51.14	49.63
Bra038614.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	50.89	48.67
Bra020672.1-P	Field mustard	extracellular	51.14	48.44
Bra035852.1-P	Field mustard	extracellular	50.13	48.29
Bra039081.1-P	Field mustard	extracellular, plastid	49.87	47.82
Bra032696.1-P	Field mustard	endoplasmic reticulum, extracellular	49.62	47.46
Bra036155.1-P	Field mustard	extracellular	50.13	47.37
Bra025274.1-P	Field mustard	extracellular	49.11	47.09
Bra029614.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	47.85	46.67
Bra015341.1-P	Field mustard	extracellular	50.63	46.4
Bra035588.1-P	Field mustard	extracellular	45.57	46.39
Bra033008.1-P	Field mustard	extracellular	46.33	45.98
Bra032494.1-P	Field mustard	extracellular	50.13	45.94
Bra019209.1-P	Field mustard	endoplasmic reticulum, extracellular	48.1	45.67
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	49.62	45.48
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	48.61	45.39
Bra015000.1-P	Field mustard	golgi, plasma membrane	49.37	43.62
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	49.37	43.24
Bra017412.1-P	Field mustard	extracellular	47.34	40.74
Bra006976.1-P	Field mustard	cytosol	46.84	40.48
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	50.13	40.33
Bra026832.1-P	Field mustard	extracellular	46.08	40.27
Bra015070.1-P	Field mustard	endoplasmic reticulum, extracellular	49.37	39.63
Bra026583.1-P	Field mustard	endoplasmic reticulum, plasma membrane	45.57	39.39
Bra024811.1-P	Field mustard	extracellular	45.57	39.22
Bra026221.1-P	Field mustard	endoplasmic reticulum	45.32	39.08
Bra016700.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	44.81	38.65
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	47.85	38.57
Bra001011.1-P	Field mustard	endoplasmic reticulum, extracellular	45.32	38.0
Bra028549.1-P	Field mustard	plasma membrane	47.09	37.96
Bra023504.1-P	Field mustard	extracellular	46.08	37.84
Bra006279.1-P	Field mustard	endoplasmic reticulum, extracellular	44.81	37.26
Bra005799.1-P	Field mustard	extracellular, golgi	48.1	37.11
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	49.11	37.02
Bra008721.1-P	Field mustard	endoplasmic reticulum, extracellular	46.08	36.47

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	EnsemblPlantsGene:Bra020859	EnsemblPlants:Bra020859.1
EnsemblPlants:Bra020859.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490
GO:GO:0046872	InterPro:IPR012334	UniProt:M4DWG5	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF18	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002545E00	:	:	:

Description

AT4G22080 (E=4e-216) | pectate lyase family protein

Coordinates

chrA08:-:11634720..11636479

Molecular Weight (calculated)

43392.6 Da

IEP (calculated)

8.573

GRAVY (calculated)

-0.207

Length

395 amino acids

Sequence
(BLAST)

001: MTLLSNICLF VALFLCQSLV LAVNNGYYGY NPSVASYLPE KPQNIMNPVD SCWRHNSDWS ANRKDLADCA VGFGSSALGG KKGNLYVVTN PNDNAANPKP
101: GSLRYGVIQD KPLWITFAKD MVITLENELM VNSYKTIDGR GAKVEIAYGP CITIQQVTNV IVHGISIHDC KPAKYGMVRS STTHVGHRKG SDGDAIAISG
201: SSNIWIDHCY LASCTDGLID VIHASTGITI SNNYFTQHVK VMLLGHNDNF VQDVNMKVTV AFNHFGPGLV ERMPRQVRRG CAHVANNRYD KWIMYAIGGS
301: ADPTIFSEGN YFIASDKSNS KEVTKREVKG GWNNWRWRTS KDVFKNGAYF VPSGYGSVDL PYSSAQRFTV APGNMVPSLT ADAGPLNCNR NLTCY

Best Arabidopsis Sequence Match ( AT4G22080.1 )
(BLAST)

001: MTLFTVSCLL VVLFLCHSLV HAENNGYYGY TPTVANYLPE KPQNIMNPVD SCWRLKSDWA ANRKDLADCV VGFGSSTLGG KKGNLYVVTN PYDNAQNPQP
101: GSLRYGVIQA KPLWITFAKD MVITLENELM VNSYKTIDGR GAKVEIAYGP CITIQDVTNV IVHGISIHDC KPGKYGMVRS SPTHVGHRKG SDGDAIAIFG
201: SSNIWIDHCY LASCTDGLID VIHASTGITI SNNYFTQHDK VMLLGHNDDF VQDVKMKVTV AFNHFGPGLV ERMPRVRRGY AHVANNRYDK WIMYAIGGSA
301: DPTIFSEGNY FIASDKSNSK EVTKREVKGG WNNWRWRTSK DVFKNGAYFV PSGYGSISLP YSSAQRFTVA PGNLVPSLTA DAGPLNCNRN GPCY

Arabidopsis Description

RHS14Probable pectate lyase 16 [Source:UniProtKB/Swiss-Prot;Acc:O65456]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.