Factsheet for Bra010482.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 6
plasma membrane 6
golgi 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24847	Canola	endoplasmic reticulum, extracellular	99.75	99.75
Bra013833.1-P	Field mustard	endoplasmic reticulum, vacuole	94.33	94.33
AT4G24780.1	Thale cress	endoplasmic reticulum, extracellular	93.35	92.89
Bra019209.1-P	Field mustard	endoplasmic reticulum, extracellular	88.18	86.06
KRH03893	Soybean	nucleus	85.47	85.47
KRH57176	Soybean	nucleus	84.98	84.98
PGSC0003DMT400039385	Potato	extracellular	84.24	84.86
Solyc03g111690.2.1	Tomato	nucleus	83.5	84.12
KRH63675	Soybean	endoplasmic reticulum, extracellular, vacuole	82.27	81.86
KRH54276	Soybean	endoplasmic reticulum, golgi, vacuole	81.53	81.13
Bra038614.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	82.02	80.63
PGSC0003DMT400069632	Potato	vacuole	80.3	80.49
Bra035852.1-P	Field mustard	extracellular	80.54	79.76
Solyc06g071840.1.1	Tomato	vacuole	69.95	79.11
Bra004073.1-P	Field mustard	extracellular	78.08	77.89
Bra004254.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	77.09	77.09
Bra033980.1-P	Field mustard	extracellular	77.09	77.09
Bra025274.1-P	Field mustard	extracellular	74.14	73.06
Bra039081.1-P	Field mustard	extracellular, plastid	73.65	72.57
Bra033008.1-P	Field mustard	extracellular	69.46	70.85
Bra032696.1-P	Field mustard	endoplasmic reticulum, extracellular	70.44	69.25
Bra036155.1-P	Field mustard	extracellular	70.69	68.66
Bra029614.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	68.47	68.64
Bra020672.1-P	Field mustard	extracellular	69.95	68.11
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	67.0	64.3
Bra015341.1-P	Field mustard	extracellular	66.75	62.88
Bra032494.1-P	Field mustard	extracellular	66.75	62.88
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	66.5	62.65
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	67.73	60.98
Bra015000.1-P	Field mustard	golgi, plasma membrane	63.05	57.27
Bra015070.1-P	Field mustard	endoplasmic reticulum, extracellular	68.97	56.91
Bra035588.1-P	Field mustard	extracellular	53.94	56.44
Bra019729.1-P	Field mustard	extracellular	50.74	55.68
Bra019730.1-P	Field mustard	extracellular	50.25	52.99
Bra006976.1-P	Field mustard	cytosol	59.36	52.74
Bra013585.1-P	Field mustard	extracellular	50.49	52.16
Bra020859.1-P	Field mustard	extracellular	50.0	51.39
Bra028549.1-P	Field mustard	plasma membrane	59.85	49.59
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	58.62	48.47
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	57.39	47.55
Bra012756.1-P	Field mustard	extracellular	45.07	47.04
Bra005799.1-P	Field mustard	extracellular, golgi	58.13	46.09
Bra026832.1-P	Field mustard	extracellular	51.23	46.02
Bra001011.1-P	Field mustard	endoplasmic reticulum, extracellular	53.2	45.86
Bra017412.1-P	Field mustard	extracellular	51.72	45.75
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	58.37	45.23
Bra006279.1-P	Field mustard	endoplasmic reticulum, extracellular	52.71	45.05
Bra016700.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	50.74	44.98
Bra026583.1-P	Field mustard	endoplasmic reticulum, plasma membrane	50.0	44.42
Bra026221.1-P	Field mustard	endoplasmic reticulum	49.75	44.1
Bra024811.1-P	Field mustard	extracellular	49.51	43.79
Bra023504.1-P	Field mustard	extracellular	51.72	43.66
Bra008721.1-P	Field mustard	endoplasmic reticulum, extracellular	52.71	42.89

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	EnsemblPlantsGene:Bra010482	EnsemblPlants:Bra010482.1
EnsemblPlants:Bra010482.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490
GO:GO:0046872	InterPro:IPR012334	UniProt:M4D1Y2	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF28	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126
SignalP:SignalP-noTM	UniParc:UPI0002545A50	:	:	:	:

Description

AT4G24780 (E=3e-233) | pectate lyase family protein

Coordinates

chrA08:+:14761457..14762875

Molecular Weight (calculated)

44688.0 Da

IEP (calculated)

7.421

GRAVY (calculated)

-0.271

Length

406 amino acids

Sequence
(BLAST)

001: MQMTKLFISI VSFLLYAHLI LSSPVPDPEA IVEEVHKSIN ASVAGRRKLG YLSCTTGNPI DDCWRCDPHW ETNRQRLADC AIGFGKNAIG GRDGRIYVVT
101: DSGNDDPVTP KPGTLRYAVV QDEPLWIIFQ RDMTIQLKEE LIMNSFKTID GRGASVHMAG GPCITIQYVT NIIIHGIHIH DCKPGGNAMV RSSPRHYGWR
201: TISDGDGVSI FGGSHVWVDH CSLSNCEDGL IDAIIGSTAI TLSNNYMTHH DKVMLLGHSD TYTRDKNMQI TIAFNHFGEG LVQRMPRCRH GYFHVVNNDY
301: THWEMYAIGG SANPTINSQG NRFLAPDIRF SKEVTKHEDA PESEWKSWNW RSSGDLLLNG AFFTPSGGAT SSSYAKASSL GARPSSLVGP LTVGSGALNC
401: RKGSRC

Best Arabidopsis Sequence Match ( AT4G24780.1 )
(BLAST)

001: MKMQTKKLFI TIVSFLLYAP LFLSSPVPDP ESVVEEVHKS INASVAGRRK LGYLSCTTGN PIDDCWRCDP HWEQHRQRLA DCAIGFGKNA IGGRDGRIYV
101: VTDSGNDNPV SPKPGTLRHA VVQDEPLWII FQRDMTIQLK EELIMNSFKT IDGRGASVHI SGGPCITIQY VTNIIIHGIH IHDCKQGGNA MVRSSPRHFG
201: WRTISDGDGV SIFGGSHVWV DHCSFSNCED GLIDAIMGST AITLSNNHMT HHDKVMLLGH SDTYSRDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN
301: DYTHWEMYAI GGSANPTINS QGNRFLAPNI RFSKEVTKHE DAPESEWKRW NWRSSGDLLL NGAFFTPSGG AASSSYAKAS SLGAKPSSLV GPLTSTSGAL
401: NCRKGSRC

Arabidopsis Description

Probable pectate lyase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5M8]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.