CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 7
plasma membrane 6
golgi 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63675	Soybean	endoplasmic reticulum, extracellular, vacuole	96.57	96.57
KRH03893	Soybean	nucleus	89.22	89.66
KRH57176	Soybean	nucleus	89.22	89.66
PGSC0003DMT400039385	Potato	extracellular	83.82	84.86
Solyc03g111690.2.1	Tomato	nucleus	83.33	84.37
CDY24847	Canola	endoplasmic reticulum, extracellular	81.13	81.53
CDY08948	Canola	endoplasmic reticulum, extracellular	81.13	81.53
Bra010482.1-P	Field mustard	endoplasmic reticulum, extracellular	81.13	81.53
CDY03419	Canola	endoplasmic reticulum, extracellular	80.64	81.03
Bra013833.1-P	Field mustard	endoplasmic reticulum, vacuole	80.64	81.03
CDY34310	Canola	endoplasmic reticulum, vacuole	80.39	80.79
PGSC0003DMT400069632	Potato	vacuole	80.15	80.74
CDY11033	Canola	endoplasmic reticulum, extracellular	80.15	80.54
KRH58231	Soybean	extracellular	79.66	80.45
CDX92652	Canola	endoplasmic reticulum, extracellular	79.9	80.3
KRG93976	Soybean	extracellular	79.41	80.2
Solyc06g071840.1.1	Tomato	vacuole	70.34	79.94
AT4G24780.1	Thale cress	endoplasmic reticulum, extracellular	79.17	79.17
KRH31375	Soybean	nucleus	76.72	77.86
KRG97506	Soybean	endoplasmic reticulum, golgi	76.72	77.28
Bra019209.1-P	Field mustard	endoplasmic reticulum, extracellular	75.74	74.28
KRG97507	Soybean	endoplasmic reticulum, extracellular	68.38	71.17
KRH31373	Soybean	extracellular	63.73	70.08
KRG90246	Soybean	nucleus	72.3	65.85
KRG99852	Soybean	nucleus	71.57	64.75
KRH33474	Soybean	nucleus	71.32	64.67
KRH46795	Soybean	nucleus	71.08	64.3
KRH11474	Soybean	extracellular	52.7	57.64
KRH02031	Soybean	extracellular	54.17	55.53
KRH54508	Soybean	extracellular	45.1	55.26
KRH36488	Soybean	extracellular	53.43	54.91
KRH36487	Soybean	extracellular	37.75	54.04
KRH63402	Soybean	extracellular	57.11	53.56
KRH19954	Soybean	endoplasmic reticulum, extracellular, plasma membrane	61.03	52.2
KRH67761	Soybean	endoplasmic reticulum, extracellular, vacuole	59.8	51.91
KRH45851	Soybean	extracellular	56.86	51.44
KRH74782	Soybean	extracellular	55.39	50.45
KRH69345	Soybean	extracellular	54.66	49.89
KRH01130	Soybean	extracellular	53.19	49.32
KRG93502	Soybean	extracellular	53.43	49.21
KRH18498	Soybean	endoplasmic reticulum, extracellular, vacuole	53.43	49.21
KRG90767	Soybean	extracellular	60.29	49.0
KRH35994	Soybean	extracellular	60.29	48.81

Protein Annotations

KEGG:00040+4.2.2.2	EntrezGene:100787082	Gene3D:2.160.20.10	MapMan:21.3.5.2	EMBL:ACUP02003512	InterPro:AmbAllergen
EnsemblPlantsGene:GLYMA_06G174700	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490
GO:GO:0046872	UniProt:I1KC87	InterPro:IPR012334	EnsemblPlants:KRH54276	ProteinID:KRH54276	ProteinID:KRH54276.1
PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683	PANTHER:PTHR31683:SF28	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI000233AA51	SEG:seg

Description

hypothetical protein

Coordinates

chr6:+:14770270..14772950

Molecular Weight (calculated)

44795.8 Da

IEP (calculated)

6.554

GRAVY (calculated)

-0.287

Length

408 amino acids

Sequence
(BLAST)

001: MTSTLLSLLF LLFSLLIPSF ISSSPVRNPE EVVQEVNRKI NGSIARPRRN LGYLWCGSGN PIDDCWRCDP NWEQNRQRLA DCAIGFGKNA IGGRDGKIYV
101: VDDDGDDDAV NPKPGSLRHA VIQDEPLWII FARDMVIQLK EELLMNSFKT IDGRGASVHV AGGPCITIQY VTNVIIHGIH IHDCKQGGNA MVRDSPRHYG
201: WRTVSDGDGV SIFGGSHVWI DHCSLSNCND GLIDAIHGST AITISNNYMT HHDKVMLLGH SDAYTQDKAM QVTIAFNHFG EGLVQRMPRC RLGYFHVVNN
301: DYTHWEMYAI GGSANPTINC QGNRFVAPDD RFSKEVTKRE DAPESEWQDW NWRSEGDLLV NGAFFTSSGA GASSSYARAS SLSARPSSLV GSITTGAGAL
401: SCKKGSPC

Best Arabidopsis Sequence Match ( AT1G67750.1 )
(BLAST)

001: MRMTLVHLSL SLFSCLLLVL SPTFIASTPV SEPELVVQEV NEKINASRRN LGVLSCGTGN PIDDCWRCDP KWEKNRQRLA DCAIGFGKHA IGGRDGKIYV
101: VTDSSDKDVV NPKPGTLRHA VIQDEPLWII FARDMVIKLK EELIMNSFKT IDGRGASVHI AGGACITVQY VTNIIIHGVN IHDCKRKGNA YVRDSPSHYG
201: WRTASDGDAV SIFGGSHVWV DHCSLSNCAD GLIDAIHGST AITISNNYLS HHNKVMLLGH SDSYTRDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN
301: DYTHWQMYAI GGSAAPTINS QGNRFLAPND HVFKEVTKYE DAPRSKWKKW NWRSEGDLFL NGAFFTPSGG GASSSYAKAS SLSARPSSLV ASVTSNAGAL
401: FCRKGSRC

Arabidopsis Description

Probable pectate lyase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXD8]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.