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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 6
  • vacuole 6
  • plasma membrane 5
  • golgi 6
  • plastid 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, plastid, secretory
BaCelLo:secretory
EpiLoc:vacuole
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:extracellular, plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:golgi
 nucleus: 21132161
nucleus: 27291164
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRG97506 Soybean endoplasmic reticulum, golgi 97.01 96.3
CDY18330 Canola cytosol 30.35 83.56
CDY70583 Canola cytosol 48.76 80.66
Bra004073.1-P Field mustard extracellular 81.59 80.59
CDY56520 Canola extracellular 81.59 80.59
CDY28857 Canola extracellular 81.59 80.59
KRH57176 Soybean nucleus 81.34 80.54
KRH03893 Soybean nucleus 81.34 80.54
AT1G67750.1 Thale cress endoplasmic reticulum, vacuole 81.59 80.39
CDY56220 Canola endoplasmic reticulum, extracellular, vacuole 80.85 80.05
CDY12666 Canola extracellular 80.6 79.8
CDY32557 Canola extracellular 80.35 79.56
Bra033980.1-P Field mustard extracellular 80.35 79.56
Bra004254.1-P Field mustard endoplasmic reticulum, extracellular, vacuole 80.35 79.56
CDY01846 Canola endoplasmic reticulum, extracellular, vacuole 80.1 79.31
KRH63675 Soybean endoplasmic reticulum, extracellular, vacuole 78.61 77.45
KRH54276 Soybean endoplasmic reticulum, golgi, vacuole 77.86 76.72
KRH58231 Soybean extracellular 75.62 75.25
KRG93976 Soybean extracellular 74.63 74.26
KRG97507 Soybean endoplasmic reticulum, extracellular 71.14 72.96
KRH31373 Soybean extracellular 65.42 70.89
KRG90246 Soybean nucleus 71.89 64.51
KRH33474 Soybean nucleus 70.9 63.33
KRG99852 Soybean nucleus 70.9 63.19
KRH46795 Soybean nucleus 70.9 63.19
KRH11474 Soybean extracellular 54.23 58.45
KRH36488 Soybean extracellular 54.73 55.42
KRH02031 Soybean extracellular 54.73 55.28
KRH54508 Soybean extracellular 44.53 53.75
KRH36487 Soybean extracellular 38.06 53.68
KRH63402 Soybean extracellular 57.21 52.87
KRH67761 Soybean endoplasmic reticulum, extracellular, vacuole 61.69 52.77
KRH19954 Soybean endoplasmic reticulum, extracellular, plasma membrane 59.95 50.52
KRH74782 Soybean extracellular 54.98 49.33
KRH45851 Soybean extracellular 54.98 49.0
KRH69345 Soybean extracellular 53.48 48.1
KRH01130 Soybean extracellular 52.49 47.95
KRG90767 Soybean extracellular 59.7 47.81
KRG93502 Soybean extracellular 52.49 47.63
KRH35994 Soybean extracellular 59.7 47.62
KRH18498 Soybean endoplasmic reticulum, extracellular, vacuole 51.74 46.95
Protein Annotations
KEGG:00040+4.2.2.2EntrezGene:100816256Gene3D:2.160.20.10MapMan:21.3.5.2EMBL:ACUP02007143InterPro:AmbAllergen
EnsemblPlantsGene:GLYMA_11G244900GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005975GO:GO:0008150
GO:GO:0008152GO:GO:0009056GO:GO:0009987GO:GO:0016829GO:GO:0030570GO:GO:0045490
GO:GO:0046872UniProt:I1LNE4InterPro:IPR012334EnsemblPlants:KRH31375ProteinID:KRH31375ProteinID:KRH31375.1
PFAM:PF00544PRINTS:PR00807PANTHER:PTHR31683PANTHER:PTHR31683:SF26InterPro:Pec_lyaseInterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulenceSMART:SM00656SUPFAM:SSF51126SignalP:SignalP-noTMUniParc:UPI00023CD044SEG:seg
Description
hypothetical protein
Coordinates
chr11:-:33857365..33859240
Molecular Weight (calculated)
44209.6 Da
IEP (calculated)
8.704
GRAVY (calculated)
-0.280
Length
402 amino acids
Sequence
(BLAST)
001: MEIPIPLSFM LLLLLVPSCI CSSPLQDPEL VVEDVQKSIN ASRRNLAFLS CGTGNPIDDC WRCDPNWEKN RKRLADCSIG FGKHAVGGRD GKIYVVTDPG
101: DHPVNPKPGT LRYGVIQEEP LWIIFKRDMV IKLKQELMMN SFKTIDGRGA SVHIAGGPCI TIQYVTNIII HGINIHDCKQ GGNAYVRDSP THYGWRTLSD
201: GDGVSIFGGS HVWVDHCSLS NCRDGLIDAI HGSTGITISN NYLTHHNKVM LLGHSDTFTR DKNMQVTIAF NHFGEGLVQR MPRCRHGYFH VVNNDYTHWR
301: MYAIGGSAAP TINSQGNRFL APNDNTFKEV TKRENSAQSK WKNWNWRSSG DLMLNGAFFT ASGAGASSSY ARASSLAAKS SSLVSSITAS AGSLSCRKGS
401: RC
Best Arabidopsis Sequence Match ( AT1G67750.1 )
(BLAST)
001: MRMTLVHLSL SLFSCLLLVL SPTFIASTPV SEPELVVQEV NEKINASRRN LGVLSCGTGN PIDDCWRCDP KWEKNRQRLA DCAIGFGKHA IGGRDGKIYV
101: VTDSSDKDVV NPKPGTLRHA VIQDEPLWII FARDMVIKLK EELIMNSFKT IDGRGASVHI AGGACITVQY VTNIIIHGVN IHDCKRKGNA YVRDSPSHYG
201: WRTASDGDAV SIFGGSHVWV DHCSLSNCAD GLIDAIHGST AITISNNYLS HHNKVMLLGH SDSYTRDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN
301: DYTHWQMYAI GGSAAPTINS QGNRFLAPND HVFKEVTKYE DAPRSKWKKW NWRSEGDLFL NGAFFTPSGG GASSSYAKAS SLSARPSSLV ASVTSNAGAL
401: FCRKGSRC
Arabidopsis Description
Probable pectate lyase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXD8]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.