CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
nucleus 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99852	Soybean	nucleus	97.34	97.34
VIT_07s0005g05520.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	79.6	80.67
KRG90246	Soybean	nucleus	76.5	77.01
KRH33474	Soybean	nucleus	76.05	76.22
KRH57176	Soybean	nucleus	64.75	71.92
KRH03893	Soybean	nucleus	64.3	71.43
KRG97506	Soybean	endoplasmic reticulum, golgi	64.08	71.36
KRH63675	Soybean	endoplasmic reticulum, extracellular, vacuole	64.52	71.32
KRH54276	Soybean	endoplasmic reticulum, golgi, vacuole	64.3	71.08
KRH31375	Soybean	nucleus	63.19	70.9
KRH58231	Soybean	extracellular	61.2	68.32
KRG93976	Soybean	extracellular	60.98	68.07
KRG97507	Soybean	endoplasmic reticulum, extracellular	54.99	63.27
KRH31373	Soybean	extracellular	50.55	61.46
KRH11474	Soybean	extracellular	47.45	57.37
KRH54508	Soybean	extracellular	40.13	54.35
KRH67761	Soybean	endoplasmic reticulum, extracellular, vacuole	55.88	53.62
KRH02031	Soybean	extracellular	46.56	52.76
KRH36487	Soybean	extracellular	33.04	52.28
KRH19954	Soybean	endoplasmic reticulum, extracellular, plasma membrane	55.21	52.2
KRH36488	Soybean	extracellular	45.45	51.64
KRH63402	Soybean	extracellular	49.67	51.49
KRH45851	Soybean	extracellular	50.55	50.55
KRH69345	Soybean	extracellular	49.45	49.89
KRH74782	Soybean	extracellular	49.22	49.55
KRH18498	Soybean	endoplasmic reticulum, extracellular, vacuole	48.56	49.44
KRG93502	Soybean	extracellular	47.45	48.31
KRG90767	Soybean	extracellular	53.22	47.81
KRH01130	Soybean	extracellular	45.9	47.05
KRH35994	Soybean	extracellular	52.55	47.02

Protein Annotations

KEGG:00040+4.2.2.2	EntrezGene:100790659	Gene3D:2.160.20.10	MapMan:21.3.5.2	EMBL:ACUP02005360	InterPro:AmbAllergen
EnsemblPlantsGene:GLYMA_08G356800	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490
GO:GO:0046872	InterPro:IPR012334	UniProt:K7LAU1	EnsemblPlants:KRH46795	ProteinID:KRH46795	ProteinID:KRH46795.1
PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683	PANTHER:PTHR31683:SF34	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI0002337C74	SEG:seg

Description

hypothetical protein

Coordinates

chr8:+:46925853..46932468

Molecular Weight (calculated)

49653.0 Da

IEP (calculated)

8.538

GRAVY (calculated)

-0.237

Length

451 amino acids

Sequence
(BLAST)

001: MKLLSPKLFT LAILLAAALV LASADAVSDN EMQKHEATES RDVVEEKLRV QSLKNSSMAE RSGGALNEHA VDNPEEIASM VDESIRNYTA RRNLNFFSCG
101: TGNPIDDCWR CDKRWYARRK RLANCGIGFG RNAIGGRDGR YYVVSDPNDD DPVNPKPGTL RHAVIQDRPL WIVFKRDMVI TLKQELIMNS FKTIDGRGVN
201: VHIAYGACIT IQFVTNVIIH GLHIHDCKVT GNAMVRSSPS HYGWRTLADG DGISIFGSSH IWIDHNSLSS CADGLVDAVM GSTAITISNN YFTHHNEVML
301: LGHSDSYVRD KQMQVTIAYN HFGEGLIQRM PRCRHGYFHV VNNDYTHWVM YAIGGSANPT INSQGNRYLA PLNPFAKEVT KRVDTGSSVW KSWNWRSEGD
401: LLLNGAFFTS SGAGAAASYA RASSLGAKSS SLVGTITSGA GVLKCRRGVM C

Best Arabidopsis Sequence Match ( AT3G07010.1 )
(BLAST)

001: MAVTKLILFA SALLLTALFI GVNASRSNET WHEHAVENPD EVAAMVDMSI RNSTERRRLG YFSCATGNPI DDCWRCDRKW QLRRKRLADC SIGFGRNAIG
101: GRDGRFYVVT DPGDDDPVNP IPGTLRHAVI QDEPLWIIFK RDMVITLKQE LIMNSFKTID GRGVNVHIAN GACLTIQYVT NIIVHGIHVH DCKPTGNAMV
201: RSSPSHYGFR SMADGDAISI FGSSHIWIDH NSLSNCADGL VDAVMSSTAI TVSNNFFTHH NEVMLLGHSD SYTRDKVMQV TIAYNHFGEG LIQRMPRCRH
301: GYFHVVNNDY THWEMYAIGG SAGPTINSQG NRFLAPVNPF AKEVTKREYT GESKWKHWNW RSEGDLFLNG AFFTRSGAGA GANYARASSL SAKSSSLVGT
401: MTSYSGALNC RAGRRC

Arabidopsis Description

Probable pectate lyase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8Z8]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.