Factsheet for PGSC0003DMT400083135

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 6
nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g071020.2.1	Tomato	extracellular	95.4	95.4
PGSC0003DMT400046723	Potato	endoplasmic reticulum, golgi, vacuole	73.79	73.79
VIT_17s0000g05740.t01	Wine grape	extracellular	71.72	72.73
KRH63402	Soybean	extracellular	65.29	65.29
GSMUA_Achr6P00830_001	Banana	endoplasmic reticulum, extracellular	64.6	64.3
KRH54508	Soybean	extracellular	48.97	63.96
TraesCS4A01G385700.1	Wheat	cytosol	31.26	62.1
GSMUA_Achr2P16830_001	Banana	endoplasmic reticulum, extracellular	62.3	61.87
PGSC0003DMT400003310	Potato	extracellular	61.38	59.87
GSMUA_Achr10P...	Banana	cytosol	47.36	59.54
GSMUA_Achr10P...	Banana	extracellular	53.33	59.49
PGSC0003DMT400014086	Potato	extracellular	60.92	59.28
PGSC0003DMT400017863	Potato	extracellular	60.0	59.05
PGSC0003DMT400002241	Potato	extracellular	59.54	59.0
HORVU6Hr1G038630.1	Barley	extracellular	53.79	57.78
EES06507	Sorghum	golgi, vacuole	58.62	57.3
PGSC0003DMT400039385	Potato	extracellular	52.64	56.82
Zm00001d046389_P007	Maize	endoplasmic reticulum, extracellular	56.55	56.81
TraesCS7A01G365700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	57.7	56.53
TraesCS7D01G356700.1	Wheat	extracellular	57.7	56.53
Zm00001d000216_P001	Maize	golgi, vacuole	56.55	56.16
OQU75805	Sorghum	mitochondrion	57.01	56.11
TraesCS7B01G261700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	57.24	56.08
HORVU7Hr1G085860.1	Barley	endoplasmic reticulum, extracellular, vacuole	57.24	56.08
Os02t0214400-01	Rice	plasma membrane	57.47	56.05
EER88571	Sorghum	endoplasmic reticulum, plasma membrane	58.39	55.95
Os06t0583900-01	Rice	plasma membrane	57.47	55.8
PGSC0003DMT400032910	Potato	endoplasmic reticulum, extracellular, vacuole	51.49	55.58
PGSC0003DMT400069632	Potato	vacuole	51.72	55.56
TraesCS7A01G086600.1	Wheat	endoplasmic reticulum, extracellular	56.32	54.69
Os06t0144200-01	Rice	extracellular, plasma membrane	56.55	54.67
PGSC0003DMT400017862	Potato	endoplasmic reticulum, extracellular	49.89	54.66
PGSC0003DMT400027955	Potato	extracellular	50.11	54.36
TraesCS6D01G170500.1	Wheat	golgi	53.1	54.35
TraesCS6B01G211900.1	Wheat	extracellular, golgi, vacuole	52.64	53.88
PGSC0003DMT400014085	Potato	extracellular, golgi	47.59	52.01
PGSC0003DMT400045436	Potato	extracellular	54.48	51.63
Os06t0144900-01	Rice	mitochondrion	55.86	51.37
PGSC0003DMT400040893	Potato	endoplasmic reticulum, vacuole	51.49	51.03
Zm00001d036158_P001	Maize	endoplasmic reticulum, extracellular, vacuole	53.1	50.99
Zm00001d036945_P001	Maize	endoplasmic reticulum	49.2	50.95
TraesCS6A01G184500.2	Wheat	extracellular, golgi, vacuole	53.79	50.54
EER87830	Sorghum	endoplasmic reticulum, extracellular, vacuole	53.56	50.11
PGSC0003DMT400011046	Potato	mitochondrion	32.64	48.8
PGSC0003DMT400076251	Potato	extracellular	49.89	48.44
PGSC0003DMT400051938	Potato	endoplasmic reticulum, extracellular	50.34	47.61
HORVU7Hr1G019500.1	Barley	mitochondrion	56.55	47.31
PGSC0003DMT400009869	Potato	cytosol	45.52	46.48
PGSC0003DMT400042395	Potato	extracellular	40.69	46.46
PGSC0003DMT400042396	Potato	endoplasmic reticulum, extracellular, vacuole	41.84	45.84
PGSC0003DMT400079776	Potato	plasma membrane	48.28	42.86
GSMUA_Achr7P08840_001	Banana	nucleus	62.53	40.6
PGSC0003DMT400060374	Potato	extracellular, plasma membrane, vacuole	47.59	36.25

Protein Annotations

KEGG:00040+4.2.2.2	EntrezGene:102590126	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334
UniProt:M1D6K0	PFAM:PF00544	PFAM:PF04431	EnsemblPlantsGene:PGSC0003DMG400033070	PGSC:PGSC0003DMG400033070	EnsemblPlants:PGSC0003DMT400083135
PRINTS:PR00807	PANTHER:PTHR31683	PANTHER:PTHR31683:SF7	InterPro:Pec_lyase	InterPro:Pec_lyase_N	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI0002953027	RefSeq:XP_006354795.1
SEG:seg	:	:	:	:	:

Description

Pectate lyase [Source:PGSC_GENE;Acc:PGSC0003DMG400033070]

Coordinates

chr6:+:51852544..51855646

Molecular Weight (calculated)

48638.9 Da

IEP (calculated)

8.639

GRAVY (calculated)

-0.391

Length

435 amino acids

Sequence
(BLAST)

001: MVTLKNRLSF FVILCTLVFS IEANIGEFDE VWRTRATQAN KNAKESYNPH PEKVAANLNK HVHRSEEGSN STRRDLHKYN GPCVATNPID RCWRCDPHWA
101: KNRQKLADCV LGFGHHTTGG KGGKIYIVTD PGDNDMVNPK PGTLRHAVIQ PGPLWIIFAH HMVIKLNQEL IMTGDKTIDA RGQQVHITGG ASLMLQYINN
201: VIIHGLHIHD IKSGNGGLIR DSINHYGFRT RSDGDGISIF GSTNIWIDHV SMSNCDDGLI DAVQASTAIT ISNCHFTHHN DVMLFGASDS YKQDAILQIT
301: LAFNHFGQGL IQRMPRVRWG FVHAVNNDYT HWIMYAIGGS QHPTILSQGN RFIAPPNPNA KEVTKRDYSP ESVWKNWVWR SQGDLMMNGA FFVESGNRNH
401: KFMTGPDMIH PRAGSDAGRL TRFSGSLNCI EGKPC

Best Arabidopsis Sequence Match ( AT3G01270.1 )
(BLAST)

001: METARLFKLV CVICIASLIP TIRANVADET DEYWVNKANE ARKHTLMAYH PDPYEIVDHF HERHYDNSTD VEGTEEEKAV ASEEEDVIEM ISSPTNSTRR
101: SLTGRGKGKG KGKWSKLTGP CTASNPIDKC WRCQPDWARR RKKLVHCVRG FGYRTTGGKR GRIYVVTSPR DDDMVNPRPG TLRHAVIQKE PLWIVFKHDM
201: SIRLSQELMI TSDKTIDARG ANVHIAYGAG ITMQYVHNII IHGLHVHHIV KSSGGLIRDS INHFGHRGEA DGDGISIFGA TNIWLDHISM SKCQDGLIDA
301: IMGSTAITIS NSHFTHHNDV MLLGAQNNNM DDKKMQVTVA YNHFGKGLVQ RMPRVRWGFV HVVNNDYTHW ELYAIGGSQG PTILSHGNRF IAPPHKQHYR
401: EVTKRDYASE SEWKNWNWRS EKDVFMNNAY FRQSGNPHFK CSHSRQQMIK PKNGMAVSKL TKYAGALDCR VGKAC

Arabidopsis Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:Q08A70]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.