Factsheet for PGSC0003DMT400027955

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g014000.2.1	Tomato	extracellular, nucleus	98.5	98.5
VIT_01s0137g00240.t01	Wine grape	extracellular	83.79	83.37
PGSC0003DMT400039385	Potato	extracellular	81.8	81.39
GSMUA_Achr6P28260_001	Banana	endoplasmic reticulum, extracellular	80.05	78.87
Bra038614.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	80.8	78.45
CDY41506	Canola	endoplasmic reticulum, extracellular, vacuole	80.8	78.45
Bra035852.1-P	Field mustard	extracellular	79.8	78.05
PGSC0003DMT400069632	Potato	vacuole	77.81	77.04
PGSC0003DMT400032910	Potato	endoplasmic reticulum, extracellular, vacuole	76.31	75.93
CDY48132	Canola	endoplasmic reticulum, golgi	80.3	75.23
CDY16732	Canola	endoplasmic reticulum, golgi	79.8	74.77
AT5G63180.1	Thale cress	plastid	78.8	73.15
CDY65626	Canola	golgi	81.05	71.59
PGSC0003DMT400040893	Potato	endoplasmic reticulum, vacuole	70.57	64.46
PGSC0003DMT400076251	Potato	extracellular	70.07	62.72
PGSC0003DMT400051938	Potato	endoplasmic reticulum, extracellular	68.58	59.78
PGSC0003DMT400042395	Potato	extracellular	54.61	57.48
PGSC0003DMT400042396	Potato	endoplasmic reticulum, extracellular, vacuole	54.11	54.66
PGSC0003DMT400009869	Potato	cytosol	56.11	52.82
PGSC0003DMT400011046	Potato	mitochondrion	37.66	51.89
PGSC0003DMT400002241	Potato	extracellular	55.61	50.8
PGSC0003DMT400014086	Potato	extracellular	56.36	50.56
PGSC0003DMT400017863	Potato	extracellular	55.61	50.45
PGSC0003DMT400083135	Potato	extracellular	54.36	50.11
PGSC0003DMT400079776	Potato	plasma membrane	60.6	49.59
PGSC0003DMT400003310	Potato	extracellular	55.11	49.55
PGSC0003DMT400046723	Potato	endoplasmic reticulum, golgi, vacuole	53.62	49.43
PGSC0003DMT400017862	Potato	endoplasmic reticulum, extracellular	48.38	48.87
PGSC0003DMT400014085	Potato	extracellular, golgi	46.88	47.24
PGSC0003DMT400045436	Potato	extracellular	53.87	47.06
PGSC0003DMT400060374	Potato	extracellular, plasma membrane, vacuole	60.35	42.38

Protein Annotations

KEGG:00040+4.2.2.2	EntrezGene:102598232	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334
UniProt:M1AQF5	PFAM:PF00544	EnsemblPlantsGene:PGSC0003DMG400010771	PGSC:PGSC0003DMG400010771	EnsemblPlants:PGSC0003DMT400027955	PRINTS:PR00807
PANTHER:PTHR31683	PANTHER:PTHR31683:SF26	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656
SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI00029626AD	RefSeq:XP_006341783.1	SEG:seg	:

Description

Pectate lyase [Source:PGSC_GENE;Acc:PGSC0003DMG400010771]

Coordinates

chr5:-:11221031..11223925

Molecular Weight (calculated)

44250.5 Da

IEP (calculated)

7.362

GRAVY (calculated)

-0.300

Length

401 amino acids

Sequence
(BLAST)

001: MGMPLSFLLL LTLLSPIFTF SSHVPDPEVI VQEVNEKINA SRRNLGYLSC GTGNPIDDCW RCDPNWEKNR QRLADCAIGF GKQAIGGKDG NIYIVTDTSD
101: DPVNPKPGTL RYGAIQDEPL WIIFSRDMVI KLKEELMLNS FKTIDGRGAS VHIAGGPCIT IQYVTNIIIH GLNIHDCKQG GNAYVRDSPQ HYGWRTISDG
201: DGVSIFGGSH VWVDHCSLSN CNDGLIDAIR GSTAITISNN FMTHHNKVML LGHSDTFTRD KNMQVTIAFN HFGEGLVQRM PRCRHGYFHV VNNDYTHWEM
301: YAIGGSASPT INSQGNRFLA PNDIFNKEVT KHEDAAESEW KNWNWRSEGD LMLNGAFFIR SGAGASSSYA KASSLSARPS TLVNSITMNA GALGCKKGKK
401: C

Best Arabidopsis Sequence Match ( AT1G67750.1 )
(BLAST)

001: MRMTLVHLSL SLFSCLLLVL SPTFIASTPV SEPELVVQEV NEKINASRRN LGVLSCGTGN PIDDCWRCDP KWEKNRQRLA DCAIGFGKHA IGGRDGKIYV
101: VTDSSDKDVV NPKPGTLRHA VIQDEPLWII FARDMVIKLK EELIMNSFKT IDGRGASVHI AGGACITVQY VTNIIIHGVN IHDCKRKGNA YVRDSPSHYG
201: WRTASDGDAV SIFGGSHVWV DHCSLSNCAD GLIDAIHGST AITISNNYLS HHNKVMLLGH SDSYTRDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN
301: DYTHWQMYAI GGSAAPTINS QGNRFLAPND HVFKEVTKYE DAPRSKWKKW NWRSEGDLFL NGAFFTPSGG GASSSYAKAS SLSARPSSLV ASVTSNAGAL
401: FCRKGSRC

Arabidopsis Description

Probable pectate lyase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXD8]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.