Factsheet for TraesCS2D01G018000.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G002930.1	Barley	cytosol	57.51	99.27
TraesCS2A01G016500.1	Wheat	golgi	97.67	96.05
TraesCS2B01G024500.2	Wheat	golgi	97.04	95.43
HORVU2Hr1G002880.2	Barley	mitochondrion	93.23	86.47
Zm00001d025067_P001	Maize	mitochondrion	81.18	84.58
Zm00001d004448_P001	Maize	endoplasmic reticulum	79.49	83.93
KXG25802	Sorghum	plastid	85.2	83.26
VIT_05s0051g00590.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	71.46	78.6
GSMUA_Achr3P00290_001	Banana	endoplasmic reticulum, extracellular, vacuole	67.02	77.13
GSMUA_Achr7P04580_001	Banana	endoplasmic reticulum, extracellular	72.09	76.29
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, golgi	72.3	75.33
KRH33474	Soybean	nucleus	70.82	74.44
KRG90246	Soybean	nucleus	70.19	74.11
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	65.75	73.52
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	66.17	72.62
CDY15517	Canola	endoplasmic reticulum, extracellular, golgi	66.17	72.62
CDY61137	Canola	extracellular	66.17	72.62
PGSC0003DMT400076251	Potato	extracellular	68.71	72.54
AT1G04680.1	Thale cress	extracellular	65.96	72.39
Solyc09g091430.2.1	Tomato	nucleus	68.92	72.28
CDX86615	Canola	endoplasmic reticulum, extracellular, golgi	65.75	72.16
Bra015341.1-P	Field mustard	extracellular	65.75	72.16
Bra032494.1-P	Field mustard	extracellular	65.75	72.16
CDX89799	Canola	extracellular	65.54	71.93
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	67.65	70.95
CDY53564	Canola	endoplasmic reticulum, extracellular, vacuole	68.08	70.77
CDY01151	Canola	endoplasmic reticulum, extracellular, vacuole	67.44	70.58
AT4G13710.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	68.29	68.72
CDY18738	Canola	endoplasmic reticulum, extracellular	67.65	67.23
Bra015000.1-P	Field mustard	golgi, plasma membrane	61.95	65.55
CDY66697	Canola	endoplasmic reticulum, golgi	61.52	65.1
CDX77470	Canola	golgi, plasma membrane	62.16	64.05
AT3G24230.1	Thale cress	endoplasmic reticulum, golgi, vacuole	61.1	63.94
TraesCS6D01G129200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	44.82	56.08
TraesCS1D01G142400.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	55.39	54.81
TraesCS6D01G170500.1	Wheat	golgi	46.93	52.24
TraesCS7D01G356700.1	Wheat	extracellular	45.67	48.65

Protein Annotations

EnsemblPlants:TraesCS2D01G018000.1	EnsemblPlantsGene:TraesCS2D01G018000	Gene3D:2.160.20.10	InterPro:AmbAllergen	InterPro:IPR012334	InterPro:Pec_lyase
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	KEGG:00040+4.2.2.2	PANTHER:PTHR31683	PANTHER:PTHR31683:SF63	PFAM:PF00544
PRINTS:PR00807	SEG:seg	SMART:SM00656	SUPFAM:SSF51126	TMHMM:TMhelix	MapMan:21.3.5.2

Description

No Description!

Coordinates

chr2D:-:8567725..8572693

Molecular Weight (calculated)

50748.8 Da

IEP (calculated)

8.234

GRAVY (calculated)

-0.183

Length

473 amino acids

Sequence
(BLAST)

001: MAEQAGARRR WAALAALGAV SVVLLFVALS GGGGVAGLSG GSRLRSASTA KVVTAAARRW LRDSTSRLTA TATAARSERA DDHADGSAVA VAVDDPEAVV
101: SQVHMSIRNS TARRNLGYLS CGTGNPIDDC WRCDSDWHNN RQRLADCGIG FGRNAIGGRD GKIYVVTDAG DDDPVNPRKG TLRHAVIQDE PLWIIFKRDM
201: VITLSQELIM NSFKTIDGRG ANVHIANGAC ITIQYVTNVI IHGLHIHDCR PTGNAMVRSS PSHYGWRTMA DGDAVSIFGA SHVWVDHCSL SNCADGLVDA
301: IMGSTAITVS NNYFTHHNEV MLLGHSDSYL KDKAMQVTIA FNHFGEGLIQ RMPRCRHGYF HVVNNDYTHW EMYAIGGSAE PTINSQGNRY LAPTNPFAKE
401: VTKRVETAQT TWKAWNWRSE GDMLLNGAFF TPSGAGASAS YSRASSLGAK SSSMVATITS GAGALSCHKG SSC

Best Arabidopsis Sequence Match ( AT4G13710.1 )
(BLAST)

001: MASSSQKLIS VCVAVLVVLA LTAMIFRNSE ISLSRKLKTE VIQSSNSSTM AAIRKLKTEE FQSLNSSTMA ATRLDGEPQQ QQHAVADDPD MVADEVAKLV
101: QMSEQNRTAR RKLGFFSCGT GNPIDDCWRC DRNWHKNRKR LADCGIGFGR NAIGGRDGRF YIVTDPTDED VVNPKPGTLR HAVIQEEPLW IVFKRDMVIE
201: LKQELIMNSF KTIDARGSNV HIANGACITI QFITNVIIHG LHIHDCKPTG NAMVRSSPSH FGWRTMADGD AVSIFGSSHI WIDHNSLSHC ADGLVDAVMG
301: STAITVSNNH FTHHNEVMLL GHSDSYTKDK LMQVTIAYNH FGEGLVQRMP RCRHGYFHVV NNDYTHWEMY AIGGSAEPTI NSQGNRYAAP MDRFAKEVTK
401: RVETDASEWK KWNWRSEGDL LLNGAFFRPS GAGASASYGR ASSLAAKPSS MVDTITSTAG ALGCRKGRPC

Arabidopsis Description

Probable pectate lyase 15 [Source:UniProtKB/Swiss-Prot;Acc:Q944R1]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.