Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, vacuole
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 6
- extracellular 5
- plastid 1
- vacuole 5
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015000.1-P | Field mustard | golgi, plasma membrane | 76.11 | 76.96 |
| CDY66697 | Canola | endoplasmic reticulum, golgi | 75.44 | 76.29 |
| CDX77470 | Canola | golgi, plasma membrane | 76.11 | 74.95 |
| HORVU2Hr1G002930.1 | Barley | cytosol | 44.91 | 74.09 |
| VIT_05s0051g00590.t01 | Wine grape | endoplasmic reticulum, extracellular, golgi | 68.81 | 72.33 |
| GSMUA_Achr11P... | Banana | cytosol, extracellular, vacuole | 55.75 | 70.0 |
| AT3G07010.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 64.38 | 69.95 |
| GSMUA_Achr8P12860_001 | Banana | cytosol | 54.42 | 69.69 |
| AT4G13710.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 72.35 | 69.57 |
| GSMUA_Achr5P15620_001 | Banana | cytosol | 53.54 | 68.95 |
| AT1G04680.1 | Thale cress | extracellular | 65.49 | 68.68 |
| KRG90246 | Soybean | nucleus | 67.7 | 68.3 |
| KRH33474 | Soybean | nucleus | 67.92 | 68.22 |
| AT5G48900.1 | Thale cress | extracellular | 62.83 | 68.11 |
| GSMUA_Achr4P26690_001 | Banana | extracellular | 54.87 | 67.57 |
| Solyc09g091430.2.1 | Tomato | nucleus | 66.81 | 66.96 |
| GSMUA_Achr11P... | Banana | extracellular | 53.76 | 66.76 |
| PGSC0003DMT400076251 | Potato | extracellular | 66.15 | 66.74 |
| AT1G67750.1 | Thale cress | endoplasmic reticulum, vacuole | 58.85 | 65.2 |
| GSMUA_Achr7P04580_001 | Banana | endoplasmic reticulum, extracellular | 63.72 | 64.43 |
| Zm00001d025067_P001 | Maize | mitochondrion | 64.6 | 64.32 |
| AT4G13210.2 | Thale cress | endoplasmic reticulum, extracellular | 62.17 | 64.16 |
| AT3G24670.1 | Thale cress | endoplasmic reticulum, extracellular | 62.39 | 64.09 |
| Zm00001d004448_P001 | Maize | endoplasmic reticulum | 63.27 | 63.84 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, golgi | 63.72 | 63.44 |
| AT4G24780.1 | Thale cress | endoplasmic reticulum, extracellular | 56.86 | 62.99 |
| GSMUA_Achr3P00290_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 57.08 | 62.77 |
| AT5G63180.1 | Thale cress | plastid | 58.85 | 61.57 |
| TraesCS2D01G018000.1 | Wheat | golgi | 63.94 | 61.1 |
| KXG25802 | Sorghum | plastid | 64.82 | 60.54 |
| TraesCS2B01G024500.2 | Wheat | golgi | 64.16 | 60.29 |
| TraesCS2A01G016500.1 | Wheat | golgi | 64.16 | 60.29 |
| AT3G27400.2 | Thale cress | endoplasmic reticulum, vacuole | 53.76 | 58.41 |
| HORVU2Hr1G002880.2 | Barley | mitochondrion | 63.72 | 56.47 |
| AT5G55720.1 | Thale cress | endoplasmic reticulum, extracellular | 47.12 | 54.34 |
| AT1G11920.1 | Thale cress | endoplasmic reticulum, extracellular | 45.8 | 53.91 |
| AT4G22080.1 | Thale cress | extracellular | 44.91 | 51.52 |
| AT4G22090.1 | Thale cress | extracellular | 44.25 | 50.76 |
| AT1G30350.1 | Thale cress | extracellular | 40.49 | 49.73 |
| AT3G53190.1 | Thale cress | extracellular | 52.21 | 48.86 |
| AT5G15110.1 | Thale cress | endoplasmic reticulum, extracellular | 47.79 | 45.76 |
| AT3G54920.1 | Thale cress | extracellular | 50.66 | 45.71 |
| AT2G02720.1 | Thale cress | extracellular, vacuole | 45.8 | 45.49 |
| AT3G01270.1 | Thale cress | endoplasmic reticulum, extracellular | 47.79 | 45.47 |
| AT1G14420.1 | Thale cress | endoplasmic reticulum | 46.02 | 45.32 |
| AT5G04310.1 | Thale cress | plasma membrane | 50.0 | 43.63 |
Protein Annotations
| KEGG:00040+4.2.2.2 | Gene3D:2.160.20.10 | MapMan:21.3.5.2 | EntrezGene:822010 | ProteinID:AEE76877.1 | ArrayExpress:AT3G24230 |
| EnsemblPlantsGene:AT3G24230 | RefSeq:AT3G24230 | TAIR:AT3G24230 | RefSeq:AT3G24230-TAIR-G | EnsemblPlants:AT3G24230.1 | TAIR:AT3G24230.1 |
| InterPro:AmbAllergen | ProteinID:BAB01365.1 | EMBL:BX823056 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016829 |
| GO:GO:0030570 | GO:GO:0045490 | GO:GO:0046872 | InterPro:IPR012334 | RefSeq:NP_189065.2 | PFAM:PF00544 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00807 | PFscan:PS51257 | PANTHER:PTHR31683 | PANTHER:PTHR31683:SF63 |
| InterPro:Pec_lyase | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | UniProt:Q9LRM5 | SMART:SM00656 | SUPFAM:SSF51126 |
| SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI000009F659 | : | : | : |
Description
Probable pectate lyase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRM5]
Coordinates
chr3:+:8774541..8777612
Molecular Weight (calculated)
49988.2 Da
IEP (calculated)
8.436
GRAVY (calculated)
-0.366
Length
452 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSSLKLTS ACFVLLFIFV GCVLTATNLR NNEISRSRKL KTEDSKSFNS SPMTTRLDGV VELNEHAVTD PDKVAHEVSN LIHMSEQNIT ARRKLGFFSC
101: GNGNLIDDCW RCDRNWNKNR KHLADCGMGF GSKAFGGRNG SYYVVTDHSD DDVVNPKPGT LRHAVIQVEP LWIIFKRDMV IKLKQELIMN SFKTIDARGA
201: NVHIANGACI TIQNITNVIV HGLHIHDCKR TGNVTVRSSP SQAGFRGTAD GDAINIFGSS HIWIDHNSLS NCTDGLVDVV NGSTAITISN NHFTHHDEVM
301: LLGHNDSYTR DKMMQVTVAY NHFGEGLIQR MPRCRHGYFH VVNNDYTHWK MYAIGGSANP TINSQGNRFA APKNHSAKEV TKRLDTKGNE WMEWNWRSEK
401: DLLVNGAFFT PSGEGASGDS QTLSLPAKPA SMVDAITASA GALSCRRGKP CY
101: GNGNLIDDCW RCDRNWNKNR KHLADCGMGF GSKAFGGRNG SYYVVTDHSD DDVVNPKPGT LRHAVIQVEP LWIIFKRDMV IKLKQELIMN SFKTIDARGA
201: NVHIANGACI TIQNITNVIV HGLHIHDCKR TGNVTVRSSP SQAGFRGTAD GDAINIFGSS HIWIDHNSLS NCTDGLVDVV NGSTAITISN NHFTHHDEVM
301: LLGHNDSYTR DKMMQVTVAY NHFGEGLIQR MPRCRHGYFH VVNNDYTHWK MYAIGGSANP TINSQGNRFA APKNHSAKEV TKRLDTKGNE WMEWNWRSEK
401: DLLVNGAFFT PSGEGASGDS QTLSLPAKPA SMVDAITASA GALSCRRGKP CY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.