Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 5
- golgi 5
- mitochondrion 2
- nucleus 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83690 | Canola | endoplasmic reticulum, extracellular, vacuole | 91.35 | 92.23 |
| Bra025274.1-P | Field mustard | extracellular | 91.11 | 91.99 |
| Bra033008.1-P | Field mustard | extracellular | 87.5 | 91.46 |
| CDY03964 | Canola | extracellular | 90.38 | 91.26 |
| CDY34149 | Canola | extracellular | 78.12 | 90.53 |
| Bra039081.1-P | Field mustard | extracellular, plastid | 88.94 | 89.81 |
| CDY00156 | Canola | extracellular, plastid | 88.7 | 89.56 |
| CDY20049 | Canola | plastid, vacuole | 88.7 | 89.56 |
| KRG93976 | Soybean | extracellular | 75.48 | 77.72 |
| KRH58231 | Soybean | extracellular | 75.24 | 77.48 |
| Solyc02g093580.2.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 74.04 | 76.24 |
| VIT_14s0219g00230.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 73.56 | 75.93 |
| PGSC0003DMT400032910 | Potato | endoplasmic reticulum, extracellular, vacuole | 73.56 | 75.93 |
| AT4G24780.1 | Thale cress | endoplasmic reticulum, extracellular | 70.67 | 72.06 |
| AT1G67750.1 | Thale cress | endoplasmic reticulum, vacuole | 69.95 | 71.32 |
| AT5G63180.1 | Thale cress | plastid | 69.47 | 66.9 |
| AT3G07010.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 64.18 | 64.18 |
| AT5G48900.1 | Thale cress | extracellular | 62.98 | 62.83 |
| AT1G04680.1 | Thale cress | extracellular | 63.46 | 61.25 |
| AT4G13210.2 | Thale cress | endoplasmic reticulum, extracellular | 62.26 | 59.13 |
| AT3G24670.1 | Thale cress | endoplasmic reticulum, extracellular | 62.26 | 58.86 |
| AT4G13710.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 64.42 | 57.02 |
| AT5G55720.1 | Thale cress | endoplasmic reticulum, extracellular | 50.96 | 54.08 |
| AT3G24230.1 | Thale cress | endoplasmic reticulum, golgi, vacuole | 58.41 | 53.76 |
| AT1G11920.1 | Thale cress | endoplasmic reticulum, extracellular | 49.52 | 53.65 |
| AT1G30350.1 | Thale cress | extracellular | 46.39 | 52.45 |
| AT4G22090.1 | Thale cress | extracellular | 47.36 | 50.0 |
| AT4G22080.1 | Thale cress | extracellular | 47.36 | 50.0 |
| AT3G53190.1 | Thale cress | extracellular | 54.09 | 46.58 |
| AT3G54920.1 | Thale cress | extracellular | 54.33 | 45.11 |
| AT2G02720.1 | Thale cress | extracellular, vacuole | 49.04 | 44.84 |
| AT1G14420.1 | Thale cress | endoplasmic reticulum | 49.04 | 44.44 |
| AT3G01270.1 | Thale cress | endoplasmic reticulum, extracellular | 50.48 | 44.21 |
| AT5G15110.1 | Thale cress | endoplasmic reticulum, extracellular | 49.28 | 43.43 |
| AT5G04310.1 | Thale cress | plasma membrane | 53.61 | 43.05 |
Protein Annotations
| KEGG:00040+4.2.2.2 | Gene3D:2.160.20.10 | MapMan:21.3.5.2 | EntrezGene:822361 | UniProt:A0A1I9LNU6 | ProteinID:AEE77312.1 |
| ProteinID:ANM64254.1 | ArrayExpress:AT3G27400 | EnsemblPlantsGene:AT3G27400 | RefSeq:AT3G27400 | TAIR:AT3G27400 | RefSeq:AT3G27400-TAIR-G |
| EnsemblPlants:AT3G27400.2 | InterPro:AmbAllergen | Unigene:At.23327 | ProteinID:BAA95715.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009605 |
| GO:GO:0009607 | GO:GO:0009624 | GO:GO:0009987 | GO:GO:0016829 | GO:GO:0030570 | GO:GO:0045490 |
| GO:GO:0046872 | InterPro:IPR012334 | RefSeq:NP_001326295.1 | RefSeq:NP_189376.1 | PFAM:PF00544 | PRINTS:PR00807 |
| PANTHER:PTHR31683 | PANTHER:PTHR31683:SF29 | InterPro:Pec_lyase | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | SMART:SM00656 |
| SUPFAM:SSF51126 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI00084845AC | SEG:seg | : |
Description
Pectate lyase [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNU6]
Coordinates
chr3:+:10140200..10143249
Molecular Weight (calculated)
46578.0 Da
IEP (calculated)
8.231
GRAVY (calculated)
-0.427
Length
416 amino acids
Sequence
(BLAST)
(BLAST)
001: MFRRMVSYSN NHFAYAFLLL LTIGNTLAFS SSLPDHVQDP NLVVDDVNRS VFNASRRSLA YLSCRTGNPI DDCWRCDPNW ETNRQRLADC AIGFGKNAIG
101: GRKGRIYVVT DPANDDPVNP RPGTLRYAVT QEEPLWIIFK RDMVIRLKKE LIITSFKTID GRGSSVHITD GPCLKIHYAT NIIIHGINIH DCKPGSGGMI
201: KDGPHHTGWW MQSDGDAVAI FGGKHVWIDH CSLSNCDDGL IDAIHGSTAI TISNNHMTHH DKVMLLGHSD SYTQDKNMQV TIAFNHFGEG LVQRMPRCRH
301: GYFHVVNNDY THWEMYAIGG SASPTIYSQG NRFLAPNTRF NKEVTKHEDA PESKWRDWNW RSEGDMLLNG AYFRESGAEA PSTYARASSL SARPSSLVGS
401: ITTTAGTLSC RRGRRC
101: GRKGRIYVVT DPANDDPVNP RPGTLRYAVT QEEPLWIIFK RDMVIRLKKE LIITSFKTID GRGSSVHITD GPCLKIHYAT NIIIHGINIH DCKPGSGGMI
201: KDGPHHTGWW MQSDGDAVAI FGGKHVWIDH CSLSNCDDGL IDAIHGSTAI TISNNHMTHH DKVMLLGHSD SYTQDKNMQV TIAFNHFGEG LVQRMPRCRH
301: GYFHVVNNDY THWEMYAIGG SASPTIYSQG NRFLAPNTRF NKEVTKHEDA PESKWRDWNW RSEGDMLLNG AYFRESGAEA PSTYARASSL SARPSSLVGS
401: ITTTAGTLSC RRGRRC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.